PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

MYB

Protein Properties

Length: 318aa MW: 36132.4 Da PI: 5.8227

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.M00357.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.4	1.2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l + ++++G+g+W+t ++ g+ R++k+c++rw +yl Migut.M00357.1.p 14 KGPWTPEEDAKLTHHIQMHGPGNWRTLPKIAGLERCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.8	4.6e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ Migut.M00357.1.p 67 RGRFSFEEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.676	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.2E-30	12	108	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	9.2E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	4.59E-11	16	61	No hit	No description
PROSITE profile	PS51294	25.137	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-26	65	116	IPR009057	Homeodomain-like
SMART	SM00717	4.8E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-15	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	5.03E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MGRSPCCDKN ALKKGPWTPE EDAKLTHHIQ MHGPGNWRTL PKIAGLERCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLKMG 120 IDPVTHSPRL DLLDLSSLLM NNSPHLNNLS NLIRLQTLVN PEALRVALTL LSSHEQNDQN 180 NHLLNYPNIL EQQIQNTVAP PVVIQPNQTF DNIINQQIPW TFATSSLQGG VGPTYSNSTS 240 DDQSLYNGVS SDQMKADNNN SRFDQSFNGM DFSFDSVIST PEPNMSGSTE EYERESFCSD 300 LFKFEIPEGF DYFDDFM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	5e-29	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269\|PubMed:19517001, ECO:0000305\|PubMed:12857823}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.M00357.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269\|PubMed:12857823, ECO:0000269\|PubMed:19517001, ECO:0000269\|PubMed:8980549}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012852372.1	0.0	PREDICTED: protein ODORANT1
Swissprot	Q9LDR8	1e-100	MY102_ARATH; Transcription factor MYB102
TrEMBL	A0A022QC63	0.0	A0A022QC63_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	8e-92	MYB-like 102

Link Out ? help Back to Top
Phytozome	Migut.M00357.1.p
Entrez Gene	105971983

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615] Zhu L,Guo J,Ma Z,Wang J,Zhou C Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis. Biomolecules, 2019. [PMID:29880735]