PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L01945.1.p
Common NameMIMGU_mgv1a004217mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 540aa    MW: 59857.6 Da    PI: 7.9507
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L01945.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-1659105148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g WT+eEd+ l++av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
  Migut.L01945.1.p  59 KGGWTPEEDDTLKKAVAAFRGKSWKKIAEFFP-DRSEVQCLHRWQKVL 105
                       688*****************************.************986 PP
2Myb_DNA-binding59.57.6e-19111157148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+WT+eEd+++ ++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
  Migut.L01945.1.p 111 KGPWTPEEDDKITELVARYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 157
                       79******************************.*************97 PP
3Myb_DNA-binding52.61e-16163206146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +++WT eE++ l++a++ +G++ W+  ar ++ gRt++ +k++w++
  Migut.L01945.1.p 163 KDAWTLEEELTLLNAHRVHGNK-WAELARLLP-GRTDNAIKNHWNS 206
                       679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.46754105IPR017930Myb domain
SMARTSM007171.4E-1458107IPR001005SANT/Myb domain
PfamPF002491.7E-1559105IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-1460115IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-2161116IPR009057Homeodomain-like
CDDcd001671.64E-1262105No hitNo description
PROSITE profilePS5129430.006106161IPR017930Myb domain
SuperFamilySSF466891.76E-30108204IPR009057Homeodomain-like
SMARTSM007171.6E-17110159IPR001005SANT/Myb domain
PfamPF002493.2E-18111157IPR001005SANT/Myb domain
CDDcd001672.73E-15113157No hitNo description
Gene3DG3DSA:1.10.10.607.0E-28117160IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-22161212IPR009057Homeodomain-like
PROSITE profilePS5129420.903162212IPR017930Myb domain
SMARTSM007174.4E-15162210IPR001005SANT/Myb domain
PfamPF002492.1E-14163206IPR001005SANT/Myb domain
CDDcd001673.57E-11165208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MAEAKSDVIC LEKKESAAAS SSSFSENSSS IVLKSPGISS PTSTSPAHRR TTGPIRRAKG  60
GWTPEEDDTL KKAVAAFRGK SWKKIAEFFP DRSEVQCLHR WQKVLNPELV KGPWTPEEDD  120
KITELVARYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPH IKKDAWTLEE ELTLLNAHRV  180
HGNKWAELAR LLPGRTDNAI KNHWNSSLKK KLDFYLATGN LPPAAKNVPQ NGARDSNSSA  240
ASIGVFLIGS NRGSNSTVLT SCGTTDSCKV EHANDKPDTR IQDEDQDHDI DTCVRSEYTS  300
SDCNKCEEMP SEAGTIHSNI MESSKLDDRH GIYDAIDQYR IIGASWHYEN PVYGTLCYEP  360
PVLGNYDLLD SNLANISLKQ SESDSSPTTS ATPFFTPPSV KSRCLPAQTP ESILKIAARS  420
FPNTPSILRK RNSDRTPKEA FLPNGEHNQK NSSESTELQN NSLRADTASD DDDDGLSGNK  480
SFNSSPPYRL RFKRTSVLKS VEKQLDFDIS MDNNTKSGGA DVKEIPPVTK FVYTRHRRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-68582125159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-68582125159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L01945.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077474.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_011077475.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_011077476.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549498.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549499.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549500.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549501.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549502.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549503.10.0transcription factor MYB3R-3-like isoform X2
SwissprotQ6R0321e-147MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A022QG780.0A0A022QG78_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54612437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-136myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]