PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L01094.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family RAV
Protein Properties Length: 344aa    MW: 37999.8 Da    PI: 10.2467
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L01094.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.48.7e-1452100155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s++kGV   + +grW A+I++      ++r++lg+f  +eeAa+a++ a+++++g
  Migut.L01094.1.p  52 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDTAAQRFRG 100
                       689***9788.8*********3.....5*************************98 PP
2B3101.74.2e-32181280196
                       EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+k+ tpsdv+k++rlv+pk++ae+h    +g++ +++ l led+  ++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+++   +
  Migut.L01094.1.p 181 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqSGSTSKGILLNLEDRGAKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFHRSTGPD 273
                       89****************************888899***************************************************876677 PP

                       E..EEEE CS
                B3  90 felvvkv 96 
                       ++l++ +
  Migut.L01094.1.p 274 KQLYIDW 280
                       7777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.86E-2552107No hitNo description
PfamPF008477.1E-952100IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-1752108IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.8E-2153108IPR001471AP2/ERF domain
PROSITE profilePS5103220.17853108IPR001471AP2/ERF domain
SMARTSM003804.2E-3053114IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.5E-40175286IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-29179282IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-28180269No hitNo description
PfamPF023621.4E-28181281IPR003340B3 DNA binding domain
SMARTSM010197.3E-26181284IPR003340B3 DNA binding domain
PROSITE profilePS5086314.099181284IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MNGTNSTDYS ISITPPPSNP PDKLCRVGSG ASVITDGENN VIEAESRKLP SSRFKGVVPQ  60
PNGRWGAQIY EKHQRVWLGT FNEEEEAARA YDTAAQRFRG RDAVTNFKPL SDQKHDDEVE  120
AAFLNSHSKA EIVDMLRKHT YADELEQSRR NFGKNGGGAA RGGGAFGFCG GAAEKAREQL  180
FEKAVTPSDV GKLNRLVIPK QHAEKHFPLQ SGSTSKGILL NLEDRGAKVW RFRYSYWNSS  240
QSYVLTKGWS RFVKEKNLRA GDVVSFHRST GPDKQLYIDW KPRNNVNAPL PAAAIAVVPG  300
QMVRLFGVNI FESPRNSGGG KRMVEMELLG LHTSKKQRVV NAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5617828411118DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L01094.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012833164.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9C6M51e-142RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A2G9I1N70.0A0A2G9I1N7_9LAMI; Uncharacterized protein
STRINGMigut.L01094.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-135RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]