PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L00459.1.p
Common NameMIMGU_mgv1a025765mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 300aa    MW: 34187.4 Da    PI: 5.12
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L00459.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161259148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd ll + vk++G g W+ I+ + g++R++k+c++rw++yl
  Migut.L00459.1.p 12 KGAWTKEEDFLLTKFVKKHGEGKWHQIPIKTGLKRCRKSCRLRWLNYL 59
                      79********************************************97 PP
2Myb_DNA-binding45.31.9e-1465110148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+++ +E +l +++ k+lG++ W++Ia +++ gRt++++k++w+++l
  Migut.L00459.1.p  65 RGPFSDDEIDLVLRLRKLLGNR-WSLIAGRIP-GRTANDVKNYWNTHL 110
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.248763IPR017930Myb domain
SuperFamilySSF466894.31E-279106IPR009057Homeodomain-like
SMARTSM007171.8E-141161IPR001005SANT/Myb domain
PfamPF002494.9E-151259IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-191365IPR009057Homeodomain-like
CDDcd001672.18E-101459No hitNo description
PROSITE profilePS5129418.11464114IPR017930Myb domain
SMARTSM007177.5E-1564112IPR001005SANT/Myb domain
PfamPF002493.4E-1365110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2166114IPR009057Homeodomain-like
CDDcd001672.13E-967110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MSDSTPVTSV RKGAWTKEED FLLTKFVKKH GEGKWHQIPI KTGLKRCRKS CRLRWLNYLK  60
PGRKRGPFSD DEIDLVLRLR KLLGNRWSLI AGRIPGRTAN DVKNYWNTHL HKKLLLSISD  120
DDDDDVADDD DDVAEDVEGD DVAGGEGDKT LKKPEHYYEI VKPRPWSFSK MANSNNNNNN  180
NNNNNNNNNN NNNNNNNNNN NNNNPTTDND NNNIEICKPK ICSDKNIDPY DKAASLLVES  240
PNEIAFQGFR EGSTWNMLTW QEEERSNFGY GNDNSAPDAA LDGWSDLSDL HMGIWDFWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-19121147108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L00459.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012832530.12e-96PREDICTED: trichome differentiation protein GL1-like
SwissprotQ9FNV92e-53MY113_ARATH; Transcription factor MYB113
TrEMBLA0A022RNF20.0A0A022RNF2_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-54myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]