PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L00434.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 281aa    MW: 31410.3 Da    PI: 8.2013
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L00434.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.6e-171462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W++eEd++l+ +++ +G+g +W + ++++g++R++k+c++rw++yl
  Migut.L00434.1.p 14 RGPWSPEEDDKLKSYIHNHGTGgNWISLPQKIGLKRCGKSCRLRWLNYL 62
                      89*********************************************97 PP
2Myb_DNA-binding38.91.9e-1269111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g +T++Ed+l+  +    G++ W+ Ia+ ++ gRt++++k++w++
  Migut.L00434.1.p  69 GGFTEDEDDLICSLYITIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                       569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.2962IPR017930Myb domain
SuperFamilySSF466891.8E-2611109IPR009057Homeodomain-like
SMARTSM007173.9E-121364IPR001005SANT/Myb domain
PfamPF002491.6E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-241569IPR009057Homeodomain-like
CDDcd001676.94E-91662No hitNo description
PROSITE profilePS5129421.19163117IPR017930Myb domain
SMARTSM007173.0E-1167115IPR001005SANT/Myb domain
PfamPF002493.5E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2370117IPR009057Homeodomain-like
CDDcd001677.76E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDDKLKSYIH NHGTGGNWIS LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FTEDEDDLIC SLYITIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR  120
QRRQHLLHAR RGETKQSINW AAAPPPPPLP QAAAAATPFL MMQAAADAYN YSNTAAVDIP  180
PPPPPPPYGN FCYSTSSSDD VSSFSHENLQ HLSEGDFHGG LTPINNINNN NNNNDGIMIP  240
ENLSSYYNSM PRQQLDGDIS CLVYPSSSYN CLFFDEQRLY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-24141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L00434.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012832541.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A022RMR70.0A0A022RMR7_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.17e-74myb domain protein 84