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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L00434.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 281aa MW: 31410.3 Da PI: 8.2013 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.6 | 2.6e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd++l+ +++ +G+g +W + ++++g++R++k+c++rw++yl Migut.L00434.1.p 14 RGPWSPEEDDKLKSYIHNHGTGgNWISLPQKIGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.9 | 1.9e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T++Ed+l+ + G++ W+ Ia+ ++ gRt++++k++w++ Migut.L00434.1.p 69 GGFTEDEDDLICSLYITIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.2 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.8E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.94E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.191 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.76E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDDKLKSYIH NHGTGGNWIS LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FTEDEDDLIC SLYITIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR 120 QRRQHLLHAR RGETKQSINW AAAPPPPPLP QAAAAATPFL MMQAAADAYN YSNTAAVDIP 180 PPPPPPPYGN FCYSTSSSDD VSSFSHENLQ HLSEGDFHGG LTPINNINNN NNNNDGIMIP 240 ENLSSYYNSM PRQQLDGDIS CLVYPSSSYN CLFFDEQRLY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L00434.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012832541.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A022RMR7 | 0.0 | A0A022RMR7_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 7e-74 | myb domain protein 84 |
Link Out ? help Back to Top | |
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Phytozome | Migut.L00434.1.p |