PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L00136.1.p
Common NameMIMGU_mgv1a023679mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB_related
Protein Properties Length: 279aa    MW: 30753.8 Da    PI: 5.272
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L00136.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-173378148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+++++E++ +++++  lG++ W++Ia +++ gRt++++k++w+++l
  Migut.L00136.1.p 33 RGKFSQDEEQTILNLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 78
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-41131IPR009057Homeodomain-like
SuperFamilySSF466891.33E-201386IPR009057Homeodomain-like
PROSITE profilePS5129426.4222882IPR017930Myb domain
SMARTSM007173.6E-163280IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-263283IPR009057Homeodomain-like
PfamPF002495.5E-163378IPR001005SANT/Myb domain
CDDcd001672.12E-123578No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRMPCIHMI GLNRCGKSCR LRCTDYLRPD IKRGKFSQDE EQTILNLHSI LGNKWSAIAT  60
HLPGRTDNEI KNFWNTHLKK KLIHMGFDPM THQPRSDIFS TLPQLIALAT LIENPSLWEE  120
QAMRLQAEQA VHMARLNNCL QNLLQQPPPS FLPPPPPTFQ SNNNTIADMA DFNLLSHYEA  180
AAAAAVPAGV LQEPMGFSHL PDLEVYDFGG LISHGENSAG SSSSEWLRQN LPPPAADPVV  240
AESDSFTNVV DGCSASSYEG GGQMWSELLD DPIFHDIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1788236108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L00136.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012853295.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ9SBF31e-56MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A022QBW30.0A0A022QBW3_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.14e-58myb domain protein 92
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]