PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.J01445.1.p | ||||||||
Common Name | MIMGU_mgv1a010479mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | DBB | ||||||||
Protein Properties | Length: 312aa MW: 33736.6 Da PI: 6.1698 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.8 | 7.8e-07 | 20 | 62 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg........Ht 38 + C+ +++ + lfC+ ++ ++C C + H++ H+ Migut.J01445.1.p 20 KPCDYCKSAAALLFCRVDSAFMCIPCDAKVHRSssaagglkHE 62 57*******9*********************877777777776 PP | |||||||
2 | zf-B_box | 25.8 | 2.2e-08 | 64 | 108 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ +e+ ++ C+ + lC +C +H H++v+ Migut.J01445.1.p 64 VWMCEVCEQAPAVVTCKADAAALCVTCDRDIHAAnplasrHERVQ 108 689*****************************6678888898876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 0.069 | 17 | 54 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 9.8E-6 | 20 | 63 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.01E-7 | 21 | 66 | No hit | No description |
PROSITE profile | PS50119 | 8.887 | 22 | 66 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.068 | 62 | 109 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.2E-14 | 62 | 109 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.4E-6 | 64 | 108 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.70E-7 | 65 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MGILQGAGKF FPAGLNVVAK PCDYCKSAAA LLFCRVDSAF MCIPCDAKVH RSSSAAGGLK 60 HERVWMCEVC EQAPAVVTCK ADAAALCVTC DRDIHAANPL ASRHERVQVV PFYDTAESVM 120 MKSTAAAALL LPPVGDCNHS SIFAAAAPPP PPPPPHMEQQ NAYIPDSWIS MNPIITAAKL 180 IPAENPDLKS MELLFQDSDQ FLDFDNYQIS SQPFTDSVVP IQTATIEPPV PARLGHEHSP 240 EDRFDIDFAG IQHQFIQQLH HPFTQPQCLV VVDGCGGGAG RKFHVGNILL VGADHQFERR 300 WLAGCRNGQR S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.J01445.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012831316.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | A0A022RR51 | 0.0 | A0A022RR51_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 4e-45 | CONSTANS-like 4 |
Link Out ? help Back to Top | |
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Phytozome | Migut.J01445.1.p |