PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.J00411.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | NF-YB | ||||||||
Protein Properties | Length: 186aa MW: 20335.6 Da PI: 6.5182 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 187.5 | 9.6e-59 | 32 | 128 | 2 | 98 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 reqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisfvtseasdkcqrekrktingddllwa+atlGfedy++plkvyl++yre+e Migut.J00411.1.p 32 REQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLARYREME 124 89******************************************************************************************* PP NF-YB 95 gekk 98 g++k Migut.J00411.1.p 125 GDTK 128 *975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.4E-55 | 29 | 145 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.79E-41 | 34 | 149 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.7E-28 | 37 | 101 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.3E-20 | 65 | 83 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 68 | 84 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.3E-20 | 84 | 102 | No hit | No description |
PRINTS | PR00615 | 1.3E-20 | 103 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MADGLSSQEA PGSPNGGSHD SGGDLSPRSG YREQDRFLPI ANISRIMKKA LPANGKIAKD 60 AKETVQECVS EFISFVTSEA SDKCQREKRK TINGDDLLWA MATLGFEDYI DPLKVYLARY 120 REMEGDTKGS GKNADGSSRK DGLQQQIPNS QSQHVHQGSF SQGMNYGNVQ QQAQHMMVKM 180 QGMDQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_B | 8e-48 | 30 | 122 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 8e-48 | 30 | 122 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.J00411.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012831929.1 | 1e-137 | PREDICTED: nuclear transcription factor Y subunit B-1-like | ||||
Refseq | XP_012831930.1 | 1e-137 | PREDICTED: nuclear transcription factor Y subunit B-1-like | ||||
Swissprot | Q8VYK4 | 1e-83 | NFYB8_ARATH; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | A0A1S3YCJ2 | 1e-104 | A0A1S3YCJ2_TOBAC; nuclear transcription factor Y subunit B-10-like isoform X1 | ||||
STRING | Migut.J00411.1.p | 1e-136 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37060.3 | 6e-86 | nuclear factor Y, subunit B8 |
Link Out ? help Back to Top | |
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Phytozome | Migut.J00411.1.p |
Publications ? help Back to Top | |||
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