PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.J00299.1.p

Common Name

LOC105952715, MIMGU_mgv1a024261mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

C2H2

Protein Properties

Length: 333aa MW: 36682.7 Da PI: 6.1834

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.J00299.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Migut.J00299.1.p 59 YSCSFCRREFRSAQALGGHMNVH 81 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.06E-6	56	85	No hit	No description
PROSITE profile	PS50157	11.219	59	86	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0098	59	81	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	61	81	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MEEARYWMWA GKSKPDLDPH LLAATAAMNS SYNESWEEQA FAEDAAGVLG GCVWPPRSYS 60 CSFCRREFRS AQALGGHMNV HRRDRARLKQ SPAVLPSSAD QVIILPPHIN NAAVVNYPAS 120 LDAPPPPPYS YYNSSSHENI CSFLYSNPNP EFSPTSHTRV SHPAKVIDAD DTMTSSPPPP 180 PNPCFLSSSS SLVVRKNDRE IYNMVPSSLH SIPRSWSSFI AEKRDGAVLS DSIKNDGEKK 240 STAGVDHHQQ DLSRAAEKAA AEDCVTDDLS TSLNLVVRRT QTNTSSDEEV ASFKRRKIES 300 TKPDKSEVFK FSSGSVEDEL DLELRLGNIL QR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	7e-13	54	81	2	29	superman protein
2l1o_A	7e-13	54	81	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.J00299.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012831752.1	0.0	PREDICTED: uncharacterized protein LOC105952715
TrEMBL	A0A022RMR0	0.0	A0A022RMR0_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9045	20	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06070.1	3e-27	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Migut.J00299.1.p
Entrez Gene	105952715