PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.I01073.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | AP2 | ||||||||
Protein Properties | Length: 499aa MW: 54720.2 Da PI: 6.7167 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.2 | 2.6e-15 | 240 | 299 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Migut.I01073.1.p 240 SQFRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 299 789******************655454478446*************************98 PP | |||||||
2 | AP2 | 45.2 | 2.3e-14 | 344 | 393 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Migut.I01073.1.p 344 FRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 393 89**************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 8.5E-17 | 240 | 309 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.35E-21 | 240 | 309 | No hit | No description |
PROSITE profile | PS51032 | 18.755 | 241 | 307 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-29 | 241 | 313 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.9E-12 | 241 | 299 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-15 | 241 | 308 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-6 | 242 | 253 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.6E-34 | 343 | 407 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.545 | 343 | 401 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.55E-23 | 344 | 402 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-16 | 344 | 401 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.7E-9 | 344 | 393 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-17 | 344 | 401 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-6 | 383 | 403 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MSNWLGFSLT PHLRIGGDGD QDDAAAAAAV EADNNGGFPV DVIRSDGSFS LFDSNHYWRY 60 DNGMNGPSPS EEAPKFEDFL GCCYSNSPPP NDARPAGEIN MNAPPSFMCD GVDRTTEDFI 120 ANNHPSLFFH PYQYSIVPTA NPHAAVYGGA GGGGAPAPAD FKSWSLQQTD HKPAVDTFRR 180 CDFQGLSLTV SPSSQTDIVV GAAPPHVAAD GKKRVAPKFS SGVKEAVPRK SIDTFGQRTS 240 QFRGVTRHRW TGRYEAHLWD NSCRKEGQTR KGRQVYLGGY DKEEKAARAY DLAALKYWGP 300 TTHINFPLST YEQELQEMDN MTRQEFVAHL RRKSSGFLCG DFLFRGVTRH HQHGRWQARI 360 GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGTSAVTNF DIIRYDVKRI CSSTTLIAGD 420 LAKRSPTRNH AVGPTDHYNS SASSSASPAR ANNNNGNNNC RAIVTFNMES STSDNELMAD 480 DNTTWNINGG NIDQWAES* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.I01073.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012856745.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 isoform X1 | ||||
Swissprot | Q1PFE1 | 1e-134 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A022Q2F1 | 0.0 | A0A022Q2F1_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8777 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-128 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.I01073.1.p |
Publications ? help Back to Top | |||
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