PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.I00622.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ERF
Protein Properties Length: 305aa    MW: 33957.7 Da    PI: 5.8719
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.I00622.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-2087136255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f++ae+Aa a+++a+++++g
  Migut.I00622.1.p  87 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDSAEGAALAYDEAALRFKG 136
                       7********.**********94....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.3E-3286145IPR001471AP2/ERF domain
SMARTSM003803.7E-3887150IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-2187145IPR016177DNA-binding domain
PfamPF008471.5E-1387136IPR001471AP2/ERF domain
PROSITE profilePS5103224.55387144IPR001471AP2/ERF domain
CDDcd000184.72E-3287145No hitNo description
PRINTSPR003671.1E-108899IPR001471AP2/ERF domain
PRINTSPR003671.1E-10110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDDDDGEYDE GSSLFPGYSS ARSQQDMSAM VSVLSRVLGY TGDNPPPPPH PPSSEYSQYL  60
PPPPTAPPQT LPQLPQQQAS TSPKRRHYRG VRQRPWGKWA AEIRDPKKAA RVWLGTFDSA  120
EGAALAYDEA ALRFKGNKAK LNFPERVQPK SDPQNMPSFN SEYRRPSYNA STSNSTRQDN  180
YTLDNVVRRQ NTEIIMGSGQ YNSTYNNSLS YGNSSQGNIN YGGGSSFVSS QGLSDNTATT  240
IMSSSLPFFY QQQQQQQQQE QQQQQQQEYD QRFQSGNYGG SSSGSGSMEN LGDQFDGNTR  300
RYFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2586147163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.I00622.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856589.10.0PREDICTED: ethylene-responsive transcription factor ERF113
SwissprotQ9FH543e-46EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A022PZP01e-147A0A022PZP0_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.19e-36ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]