PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

MYB_related

Protein Properties

Length: 231aa MW: 25210.4 Da PI: 9.2016

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.I00074.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.9	2.3e-13	70	114	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G g+W+ I+r k+Rt+ q+ s+ qky Migut.I00074.1.p 70 PWTEEEHKLFLIGLEKIGRGDWRGISRNYVKTRTPTQVASHAQKY 114 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	13.107	66	119	IPR017884	SANT domain
SuperFamily	SSF46689	7.33E-17	66	120	IPR009057	Homeodomain-like
SMART	SM00717	3.1E-8	67	117	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.2E-10	69	114	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-16	69	117	IPR006447	Myb domain, plants
CDD	cd00167	5.64E-9	70	115	No hit	No description
Pfam	PF00249	1.3E-10	70	114	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MSLCSETPSA AAGGGEIMLF GVRVRVDPMR KSVSMNNLSE YEPVVNCSNP NDVNNTTEAP 60 KVAAEDGGVP WTEEEHKLFL IGLEKIGRGD WRGISRNYVK TRTPTQVASH AQKYFLRRNN 120 LNRRRRRSSL FDITTDSVTA MATEESKNHQ DNTPVQMVPR PPPTVAMPLP VTSNVNGFSL 180 GPVLFSNQHV KNEASSLSLR LSLSSGQDQP SRMGSPFHML NSGDSVLSVA *

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.I00074.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012831100.1	1e-139	PREDICTED: transcription factor MYB1R1
Swissprot	Q2V9B0	3e-52	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A022RRY8	1e-134	A0A022RRY8_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2574	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	6e-47	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Migut.I00074.1.p

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]