PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H01721.1.p
Common NameMIMGU_mgv1a019344mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB_related
Protein Properties Length: 290aa    MW: 31148.7 Da    PI: 6.1209
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H01721.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32.1e-142870246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                      g ++  E++ +v ++  lG++ W+ Ia+ ++ gRt++++k++w++
  Migut.H01721.1.p 28 GQFSDTEEQTIVTLHSVLGNR-WSVIAAQLP-GRTDNDVKNHWNT 70
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.263121IPR017877Myb-like domain
SuperFamilySSF466894.18E-21779IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-5720IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-232176IPR009057Homeodomain-like
PROSITE profilePS5129424.3412276IPR017930Myb domain
SMARTSM007171.8E-122674IPR001005SANT/Myb domain
PfamPF002499.6E-132870IPR001005SANT/Myb domain
CDDcd001678.64E-103072No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
GIITGLQRCG KSCRLRWTNY LRPDLKHGQF SDTEEQTIVT LHSVLGNRWS VIAAQLPGRT  60
DNDVKNHWNT KLKKKLSGMG IDPVTHKPFS HLISEIATLP PPQAPNLAEA ALGCFKDEML  120
HLLTKRRINI QLQHQFGSNP AAGGGGGIKH EEQQQQHKDE TIERIRFGMS KAAREPSPTN  180
SRPWGDSAAA YHGGGGFGCF PAGSESGFHY ELASLGGGDD GDMSPWSQSV CMGSTCVAAA  240
AAVAEQERVD GGDNGEDSGS GKEAGNNIYN SECSLWDLPT DEDLMNPLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2087640108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H01721.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012841597.10.0PREDICTED: transcriptional activator Myb, partial
SwissprotQ7XQN14e-78MYB80_ORYSJ; Transcription factor MYB80
TrEMBLA0A022R0H50.0A0A022R0H5_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.13e-75myb domain protein 103