PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H01247.1.p | ||||||||
Common Name | LOC105951261, MIMGU_mgv1a007548mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | C3H | ||||||||
Protein Properties | Length: 405aa MW: 44539 Da PI: 7.9161 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.8 | 6.5e-12 | 46 | 72 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C yG++C+F+H++ Migut.H01247.1.p 46 PGEPDCIYYLRTGACGYGSNCRFNHPF 72 5789*********************95 PP | |||||||
2 | zf-CCCH | 37 | 5.6e-12 | 95 | 119 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCkyG++Ck++H++ Migut.H01247.1.p 95 QPDCGYYLKTGTCKYGSTCKYHHPK 119 789********************96 PP | |||||||
3 | zf-CCCH | 35.7 | 1.4e-11 | 139 | 162 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG+CkyG CkF+H++ Migut.H01247.1.p 139 RACPYYMRTGICKYGYACKFHHPQ 162 78********************97 PP | |||||||
4 | zf-CCCH | 33.7 | 6.1e-11 | 247 | 272 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ G CkyG+ Ck++H++ Migut.H01247.1.p 247 DQPECRYFMNHGSCKYGPDCKYHHPR 272 689*********************96 PP | |||||||
5 | zf-CCCH | 34.3 | 4e-11 | 289 | 315 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ +G+CkyG++C+F H++ Migut.H01247.1.p 289 PGQAICSHYNLYGICKYGPTCRFDHPM 315 5789*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.08 | 45 | 73 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.7E-6 | 45 | 72 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-9 | 47 | 72 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 50 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-4 | 51 | 70 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9E-5 | 92 | 119 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.765 | 92 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-9 | 95 | 119 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 97 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 98 | 120 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-7 | 134 | 164 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.295 | 135 | 163 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 137 | 162 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-9 | 138 | 162 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-5 | 139 | 161 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.549 | 245 | 273 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.1E-5 | 245 | 272 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-8 | 247 | 272 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.03E-6 | 248 | 275 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-5 | 251 | 273 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 287 | 314 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.155 | 288 | 316 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-6 | 288 | 315 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-8 | 290 | 315 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-4 | 293 | 313 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MPVNRKFQRN ASAIDSVEEM MRRVKVEGND ENGEVGDEPV VYPDRPGEPD CIYYLRTGAC 60 GYGSNCRFNH PFNNAGGQVY GVKNTTIELP ERAGQPDCGY YLKTGTCKYG STCKYHHPKE 120 RQADVLTNML GLPMRQDSRA CPYYMRTGIC KYGYACKFHH PQPALAPNVL PAVVGTVYGA 180 SASSAVPSSA VPQLSAKATY FPTSLQLPQS YMPLFISQSQ GWNAYAGGMN HLSNGMMSAS 240 YLPERPDQPE CRYFMNHGSC KYGPDCKYHH PREKLASISF GPLGLPLRPG QAICSHYNLY 300 GICKYGPTCR FDHPMDGGYH PYAYSMSLPP LANAYIPNIN NTPNIQRILP INETTSSNLS 360 EWINNGAATA SNNKNRTKSI EGDPSDSLPY SSKASSEVIH NESD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H01247.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012830113.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 66-like | ||||
TrEMBL | A0A022RSU5 | 0.0 | A0A022RSU5_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13571 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 6e-86 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.H01247.1.p |
Entrez Gene | 105951261 |