PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00362.1.p
Common NameMIMGU_mgv1a0235351mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family GRAS
Protein Properties Length: 438aa    MW: 48481.2 Da    PI: 5.9351
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00362.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS285.91.2e-87634332345
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykal...ppsetseknsseelaalkl..fsevs 88 
                       ++lL++cA+a++++d++laq++L+ l+++a pdgd++qRl+  f++AL +r a s++ +l +a+   ++ ++++++s++++++ +l  f++++
  Migut.H00362.1.p  63 EQLLVHCATAIETNDATLAQQILWVLNNIAPPDGDSNQRLTCGFLRALISRAAMSGNcKLLSAVanvHAASDPTTTSTHRFSIIELasFVDLT 155
                       79***********************************************999874432444444211222333334666666666678***** PP

              GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfef 178
                       P+++f++ +aN a+leaveg   vHi+D+++++++Q p+L++a+a+R +gpp +++T+ g++e +      ++ee+g +L +fA++ +v +ef
  Migut.H00362.1.p 156 PWHRFGFTAANAAVLEAVEGYPVVHIVDLSLTHCMQIPTLIDAIAARLDGPPLVKLTVAGAMEDFppmLDLSYEELGTKLVNFARSRNVAMEF 248
                       *************************************************************999898888999******************** PP

              GRAS 179 nvl.......vakrledleleeLrvkp..gEalaVnlvlqlhrll..........desvsleserdevLklvkslsPkvvvvveqeadhnses 252
                       +v+        ++ +++l++++Lr  +  +Eal++n++++lh+++           e+++ +s r+ +Lk+v++l P+vvv+v+++ad +s++
  Migut.H00362.1.p 249 RVVpstssngFSSLIDQLRMQQLRRAEngREALVINCHMMLHYIPeeeeehqtltYETAAAASLRTMFLKAVRGLDPTVVVLVDEDADFTSGN 341
                       ***998777666778888999998877899***************9999999999889999999***************************** PP

              GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                       ++ r+ +a +y +  +d++++ lpr s++r+++E+  + ++i+nvv++eg++r+er e ++kW +r+++aGF+ v++se+a +++k +l +++
  Migut.H00362.1.p 342 LASRLRSAYNYLWIPYDTVDTFLPRGSKQRQWYEAD-ICWKIENVVSHEGNRRVERLEPKSKWVRRMRSAGFGGVAYSEEAIAEVKNMLDEHA 433
                       ************************************.****************************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.33536437IPR005202Transcription factor GRAS
PfamPF035144.0E-8563433IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MMQFTETFPP PPPPLHQSSV ISTTPPSFNP MNKNQVLRVG SWPGYFPTSK SLQGRLGDAN  60
CMEQLLVHCA TAIETNDATL AQQILWVLNN IAPPDGDSNQ RLTCGFLRAL ISRAAMSGNC  120
KLLSAVANVH AASDPTTTST HRFSIIELAS FVDLTPWHRF GFTAANAAVL EAVEGYPVVH  180
IVDLSLTHCM QIPTLIDAIA ARLDGPPLVK LTVAGAMEDF PPMLDLSYEE LGTKLVNFAR  240
SRNVAMEFRV VPSTSSNGFS SLIDQLRMQQ LRRAENGREA LVINCHMMLH YIPEEEEEHQ  300
TLTYETAAAA SLRTMFLKAV RGLDPTVVVL VDEDADFTSG NLASRLRSAY NYLWIPYDTV  360
DTFLPRGSKQ RQWYEADICW KIENVVSHEG NRRVERLEPK SKWVRRMRSA GFGGVAYSEE  420
AIAEVKNMLD EHAAGTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-465743582444Protein SHORT-ROOT
5b3h_B6e-475743528390Protein SHORT-ROOT
5b3h_E6e-475743528390Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H00362.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060859e-32AP006085.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT28L24, TM0128, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855599.10.0PREDICTED: uncharacterized protein LOC105974979
SwissprotQ9SN221e-169SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A022RWR10.0A0A022RWR1_ERYGU; Uncharacterized protein (Fragment)
STRINGMigut.H00362.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87812429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-171GRAS family protein