PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00281.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 288aa    MW: 32935.4 Da    PI: 8.2199
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00281.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161663148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd+ l+++v+ +G g W++++ + g++R++k+c++rw++yl
  Migut.H00281.1.p 16 KGAWTKEEDQMLKKCVQTYGEGKWHLVPLRTGLNRCRKSCRLRWLNYL 63
                      79********************************************97 PP
2Myb_DNA-binding41.43.2e-1369113147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg + ++E +l+v+++++lG++ W+ Ia +++ gRt++++k++w+++
  Migut.H00281.1.p  69 RGIFNQDEIDLIVRLHNLLGNR-WSWIAGRVP-GRTANDIKNFWNTH 113
                       677999****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.0671367IPR017930Myb domain
SuperFamilySSF466895.74E-2714110IPR009057Homeodomain-like
SMARTSM007173.7E-151565IPR001005SANT/Myb domain
PfamPF002499.8E-161663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-201770IPR009057Homeodomain-like
CDDcd001671.61E-101863No hitNo description
PROSITE profilePS5129414.41768118IPR017930Myb domain
SMARTSM007176.5E-1268116IPR001005SANT/Myb domain
PfamPF002491.3E-1170113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-1971116IPR009057Homeodomain-like
CDDcd001679.64E-872114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MKEMEKNKGV VGGVRKGAWT KEEDQMLKKC VQTYGEGKWH LVPLRTGLNR CRKSCRLRWL  60
NYLRPNLKRG IFNQDEIDLI VRLHNLLGNR WSWIAGRVPG RTANDIKNFW NTHFHKISTS  120
PTTAVGESSR TAVVVKTITA NNIIRPRPRT VSNNNNNNII NYPSDEVIVT TSKLTKETII  180
INDKDINNKL KNNNVEELLD DQSINKWWGD LLEMTEKLDD AEFPPPLLFS DQQYHPLIET  240
TPLLSPGLPP PPPPPHNNNN NNNNDCLNDS GLFLDVDVWE LLNCHDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2016112499MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H00281.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012854403.10.0PREDICTED: transcription factor MYB113-like
SwissprotQ9FNV98e-61MY113_ARATH; Transcription factor MYB113
TrEMBLF5CI431e-110F5CI43_9LAMI; MYB2-like protein 2 (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.15e-57myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]