PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

MYB

Protein Properties

Length: 215aa MW: 24741 Da PI: 7.776

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.H00102.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.6e-17	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l ++++ +G g W++ ar g++Rt+k+c++rw++yl Migut.H00102.1.p 15 KGPWTMEEDLILMNYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 62 79********************************************97 PP
2	Myb_DNA-binding	54.4	2.8e-17	68	111	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++ Migut.H00102.1.p 68 RGNITAEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 111 7999****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.2E-23	8	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.445	10	62	IPR017930	Myb domain
SuperFamily	SSF46689	4.49E-30	13	109	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-11	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-15	15	62	IPR001005	SANT/Myb domain
CDD	cd00167	3.11E-9	17	62	No hit	No description
PROSITE profile	PS51294	25.403	63	117	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-24	66	117	IPR009057	Homeodomain-like
SMART	SM00717	3.8E-15	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	5.7E-16	68	111	IPR001005	SANT/Myb domain
CDD	cd00167	3.91E-12	72	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0080086	Biological Process	stamen filament development
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MDKKPCISQD VEVRKGPWTM EEDLILMNYI ANHGEGVWNS LARSAGLKRT GKSCRLRWLN 60 YLRPDVRRGN ITAEEQLLIM ELHAKWGNRW SKIAKHLPGR TDNEIKNYWR TRIQKHIKQA 120 DQNCSTGQLA DVSNDQASTS QLSSCCPADN HTVESYSPSS FNANIEPFQP PFPTESNENL 180 WSMEDLWSCS YSTANKYIYI YIYIHVCVYV YVVL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-25	12	117	24	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.H00102.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012849621.1	1e-162	PREDICTED: myb-related protein 305
Swissprot	P81391	1e-108	MYB05_ANTMA; Myb-related protein 305
TrEMBL	A0A022RXN6	1e-160	A0A022RXN6_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27810.1	3e-83	myb domain protein 21

Link Out ? help Back to Top
Phytozome	Migut.H00102.1.p
Entrez Gene	105969410

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]