PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.G01004.1.p | ||||||||
Common Name | LOC105958033, MIMGU_mgv1a012663mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | DBB | ||||||||
Protein Properties | Length: 245aa MW: 27273.7 Da PI: 4.7004 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.4 | 2.6e-07 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+ +++ C ++ lC++C +e H H++ Migut.G01004.1.p 4 QCDVCEKAPATVICCADEAALCAKCDVEVHAAnklaskHQR 44 7*****************************65667777765 PP | |||||||
2 | zf-B_box | 27.7 | 5.4e-09 | 53 | 95 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + + C+ ++ek + +fC +++ ++C+dC +++H+ H+ Migut.G01004.1.p 53 KLPSCDICQEKTAFIFCVEDRAMFCKDCDDAIHSAnsraanHQ 95 6789*****************************6556666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.3 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.29E-7 | 3 | 47 | No hit | No description |
SMART | SM00336 | 8.9E-10 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.1E-5 | 4 | 44 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.186 | 52 | 99 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.1E-14 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.9E-7 | 53 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.80E-6 | 55 | 91 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MKIQCDVCEK APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLECL SNKLPSCDIC 60 QEKTAFIFCV EDRAMFCKDC DDAIHSANSR AANHQRFLAT GIKVALNSSC NKEASKSQLD 120 PKPPKSNVQQ QQQQQQIGLK TTPHNVSAVS SPSWAVDDLL QFSYDSSDKK EQLDFNELEW 180 LTEMNLFGEQ VPQEALDAAE VPQLPMSQSN TMNSYYRAPK YYSPNKKPRI EDDDEEFFTV 240 PDLG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.G01004.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012837486.1 | 0.0 | PREDICTED: B-box zinc finger protein 25-like | ||||
Swissprot | Q9SID1 | 7e-97 | BBX25_ARATH; B-box zinc finger protein 25 | ||||
TrEMBL | A0A022REQ1 | 1e-180 | A0A022REQ1_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5410 | 22 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31380.1 | 2e-98 | salt tolerance homologue |
Link Out ? help Back to Top | |
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Phytozome | Migut.G01004.1.p |
Entrez Gene | 105958033 |
Publications ? help Back to Top | |||
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