PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.G00175.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | NF-YB | ||||||||
Protein Properties | Length: 177aa MW: 20085.1 Da PI: 4.7049 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 160.8 | 2e-50 | 48 | 141 | 4 | 97 |
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 + r+lPianv+rimk++lP+nakisk+aket+qec+sefi+fvt+eas+kc++e+rkt+ngdd++wa+++lGf+dyv plk yl ++r++eg+ Migut.G00175.1.p 48 ESRLLPIANVGRIMKQTLPNNAKISKEAKETMQECASEFIGFVTGEASEKCRKERRKTVNGDDICWAMGQLGFDDYVGPLKRYLIRFRDFEGN 140 679****************************************************************************************98 PP NF-YB 97 k 97 + Migut.G00175.1.p 141 N 141 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.6E-46 | 47 | 168 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.34E-36 | 49 | 156 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.8E-27 | 51 | 115 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.5E-14 | 79 | 97 | No hit | No description |
PRINTS | PR00615 | 1.5E-14 | 98 | 116 | No hit | No description |
PRINTS | PR00615 | 1.5E-14 | 117 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MSSSNNNHIN STSKRPIFSL RSTVDIDPEA NDDDQRSRST ADTDQYSESR LLPIANVGRI 60 MKQTLPNNAK ISKEAKETMQ ECASEFIGFV TGEASEKCRK ERRKTVNGDD ICWAMGQLGF 120 DDYVGPLKRY LIRFRDFEGN NNNNNNINNN ININRVGVNI IDEEEMLMEE ENNQKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 4e-38 | 50 | 136 | 6 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 4e-38 | 50 | 136 | 6 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.G00175.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012828059.1 | 1e-106 | PREDICTED: nuclear transcription factor Y subunit B-5-like, partial | ||||
Swissprot | O82248 | 8e-50 | NFYB5_ARATH; Nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | A0A022RTW1 | 1e-74 | A0A022RTW1_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.G00175.1.p | 1e-127 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 5e-51 | nuclear factor Y, subunit B5 |
Link Out ? help Back to Top | |
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Phytozome | Migut.G00175.1.p |
Publications ? help Back to Top | |||
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