PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.F00160.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | GRF | ||||||||
Protein Properties | Length: 461aa MW: 50617.3 Da PI: 7.7408 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.9 | 2e-24 | 168 | 210 | 2 | 44 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrC+RtDGKkWRCsr+v +g+k+CErHlhrgr rsrk++e Migut.F00160.1.p 168 LEPGRCKRTDGKKWRCSREVAPGHKYCERHLHRGRPRSRKPVE 210 69**************************************986 PP | |||||||
2 | QLQ | 54.3 | 4.1e-19 | 111 | 145 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT aQ+ +L++Q+++yKy+++++PvPp+Ll++++ Migut.F00160.1.p 111 PFTCAQWKELERQAMIYKYMISSVPVPPNLLFPLS 145 8*******************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.1E-12 | 110 | 146 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.953 | 111 | 146 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.2E-13 | 111 | 144 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.934 | 167 | 211 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.6E-20 | 169 | 210 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MEKGATVRTN GFNISDNKLL LSSNSDEIVR LMKQKLHHPH PHPHPHHHSS DEEVFPSKIW 60 MDLHRHRPVD AGGANEAAAV GRDDPSSSYS TTTTAPPYKS LGGGGMAAAF PFTCAQWKEL 120 ERQAMIYKYM ISSVPVPPNL LFPLSRTDNY SPSSLVYNGG GYSKNGDLEP GRCKRTDGKK 180 WRCSREVAPG HKYCERHLHR GRPRSRKPVE LAKNDAVLLP NKKTRLQHQH LPISTPTTSL 240 HLAAASATTT TTTLPKSDPT ISSYKGFNRD MGFGFANEGS SIYGSTPIFH QDYYMDQLQL 300 NMLPYNPTME IGPQATGFID AWSTDNLNTN NQNNNGSNEY SLSWMNRGDF SPSLDLSIAM 360 AAGNFIDSEM GNVRMGADHE ENTIKDSDSS MPSPVFWEPF GRGGPLAEAL QVTSPRECSI 420 GTPATTVSSP SGVVYNNNNN SNSRTDHGSV CNSPTFHRFS * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.F00160.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012843420.1 | 0.0 | PREDICTED: growth-regulating factor 7-like | ||||
TrEMBL | A0A2G9HZL0 | 1e-110 | A0A2G9HZL0_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7032 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53660.1 | 2e-37 | growth-regulating factor 7 |
Link Out ? help Back to Top | |
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Phytozome | Migut.F00160.1.p |