PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.E01464.1.p | ||||||||
Common Name | MIMGU_mgv1a025068mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 256aa MW: 28879.2 Da PI: 8.3394 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.7 | 1.2e-28 | 92 | 151 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C+++ +Cpvkkkv+rs +dp++++ tYeg+H+h+ Migut.E01464.1.p 92 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFSpNCPVKKKVQRSCDDPSLLVATYEGQHHHH 151 58***************************99***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.1E-28 | 87 | 152 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.006 | 87 | 153 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.63E-25 | 89 | 152 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-31 | 92 | 152 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-23 | 93 | 151 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
PHDHLIQELN RMKSENKKLT EMLTIVSINY NNLKKNQSDE ELPETRKRKA DEIENFGDFN 60 NRNNTFFNPK VIKSNVSRIH VRIDPSDTSL VVKDGYQWRK YGQKVTRDNP SPRAYFKCSF 120 SPNCPVKKKV QRSCDDPSLL VATYEGQHHH HHANVSAEPP QGVAGASEWG PHSGSKQSID 180 DVANAFTCSS KIKEAIAKNE SSDQIQHQLL VEQMASSLSR NRDFTTALAA AITGRIFEEV 240 ISENNDEIVS RSRVF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-20 | 91 | 150 | 13 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Positively modulates defense-related gene expression and disease resistance. {ECO:0000269|PubMed:12068113}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.E01464.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and pathogens. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:12068113}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012847092.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40, partial | ||||
Swissprot | Q9C5T4 | 2e-59 | WRK18_ARATH; WRKY transcription factor 18 | ||||
TrEMBL | A0A022QPJ6 | 0.0 | A0A022QPJ6_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.E01464.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4500 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31800.2 | 9e-62 | WRKY DNA-binding protein 18 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.E01464.1.p |