PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.E00578.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

C2H2

Protein Properties

Length: 585aa MW: 62600.7 Da PI: 9.1228

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.E00578.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Migut.E00578.1.p 83 FVCEVCNKGFQREQNLQLHRRGH 105 89*******************88 PP
2	zf-C2H2	13.9	0.00016	159	181	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+k + +s+ k H +t+ Migut.E00578.1.p 159 YKCEKCSKKYAVQSDWKAHSKTC 181 9******************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	8.1E-6	82	105	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.15E-8	82	105	No hit	No description
PROSITE profile	PS50157	11.094	83	105	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0041	83	105	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	3.8E-5	83	105	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2
SMART	SM00355	140	124	154	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.3E-5	147	180	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.15E-8	154	179	No hit	No description
SMART	SM00355	75	159	179	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence Send to blast
MAASSSSSAF HLMRDENDNQ QLQLHHHQLM ASSSSAPPPP PAASAPPPAS STNKKRRNQP 60 GNPNPDAEVI ALSPKTLMAT NRFVCEVCNK GFQREQNLQL HRRGHNLPWK LRQKSTKEVR 120 RKVYLCPEPT CVHHDPARAL GDLTGIKKHY SRKHGEKKYK CEKCSKKYAV QSDWKAHSKT 180 CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AQESARNMNP PSLNSIGSHL LGLSQMSTDH 240 HNHNNHNHNH NHNQINQSLS NHDMLRLGGG SRPGPQFETL VGSGFRPARS SLPPPSPALY 300 SLQQQSNEED HHQQHNNGML SNKASSSTQL HGLMQLPQLH NNAANNSTSN SSTAGLFNLS 360 FFPPGNSVAA SNIDGGHHSG GGGDQESTLF SSGNLMSMAI PSLYSTSHAI QNPSGGGGTA 420 HMSATALLQK AAQLGSTTAN SGASSLLKSF GKSSDNDHHH HSLHGHSFIG GGGGTATTTV 480 FGENDNNGGN NHLHDLVNSI AGGGSGSIFG GEIDDYRSSS GIFHGGGNSS NQGGGFSSLE 540 QGRLTRDFLG VGEIVRSVRE QQQQQNAAMD NSQSQAFGGG ANFR*

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence Send to blast

MAASSSSSAF HLMRDENDNQ QLQLHHHQLM ASSSSAPPPP PAASAPPPAS STNKKRRNQP  60
GNPNPDAEVI ALSPKTLMAT NRFVCEVCNK GFQREQNLQL HRRGHNLPWK LRQKSTKEVR  120
RKVYLCPEPT CVHHDPARAL GDLTGIKKHY SRKHGEKKYK CEKCSKKYAV QSDWKAHSKT  180
CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AQESARNMNP PSLNSIGSHL LGLSQMSTDH  240
HNHNNHNHNH NHNQINQSLS NHDMLRLGGG SRPGPQFETL VGSGFRPARS SLPPPSPALY  300
SLQQQSNEED HHQQHNNGML SNKASSSTQL HGLMQLPQLH NNAANNSTSN SSTAGLFNLS  360
FFPPGNSVAA SNIDGGHHSG GGGDQESTLF SSGNLMSMAI PSLYSTSHAI QNPSGGGGTA  420
HMSATALLQK AAQLGSTTAN SGASSLLKSF GKSSDNDHHH HSLHGHSFIG GGGGTATTTV  480
FGENDNNGGN NHLHDLVNSI AGGGSGSIFG GEIDDYRSSS GIFHGGGNSS NQGGGFSSLE  540
QGRLTRDFLG VGEIVRSVRE QQQQQNAAMD NSQSQAFGGG ANFR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-33	155	216	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-33	155	216	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000305\|PubMed:19726569}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00256	DAP	Transfer from AT2G02080	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.E00578.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000305\|PubMed:17933900}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012846192.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic isoform X1
Swissprot	Q8GYC1	1e-132	IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBL	A0A022QUM8	0.0	A0A022QUM8_ERYGU; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-107	indeterminate(ID)-domain 4

Link Out ? help Back to Top
Phytozome	Migut.E00578.1.p

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]