PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E00306.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family RAV
Protein Properties Length: 363aa    MW: 39915.6 Da    PI: 9.7209
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E00306.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.91.6e-105899148
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48
                      s++kGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ 
  Migut.E00306.1.p 58 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDT 99
                      689***9788.8*********3.....5**********99******96 PP
2B3102.81.8e-32187288198
                       EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+k+ tpsdv+k++rlv+pk++ae+h    +g++ +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL++gD+v F+++   +
  Migut.E00306.1.p 187 FEKAVTPSDVGKLNRLVIPKQHAERHfplqSGSTSKGVLLNFEDAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLRAGDIVSFQRSTAPD 279
                       89****************************888899***************************************************887788 PP

                       E..EEEEE- CS
                B3  90 felvvkvfr 98 
                        +l++ + +
  Migut.E00306.1.p 280 NQLYIDWKS 288
                       888888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.24E-2058112No hitNo description
PfamPF008473.7E-65898IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-1358113IPR016177DNA-binding domain
SMARTSM003802.8E-2359119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-1759113IPR001471AP2/ERF domain
PROSITE profilePS5103215.90959113IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.108.9E-42178293IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.55E-30185287IPR015300DNA-binding pseudobarrel domain
CDDcd100178.37E-29186275No hitNo description
SMARTSM010193.5E-25187290IPR003340B3 DNA binding domain
PfamPF023624.5E-29187289IPR003340B3 DNA binding domain
PROSITE profilePS5086314.819187290IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDLSFADEST TSETVSITPA VAASKSPPES LCRVGSGASA ITDAENGVEA ESRKLPSSRF  60
KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAARAYDTR RRFRGRDAVT NFKPLSETQE  120
DGVETAFLNT HSKAEIVDML RKHTYGDELE QSRRSYNSNG RRTAEDGPFG FSGRGGDRAA  180
KAREQLFEKA VTPSDVGKLN RLVIPKQHAE RHFPLQSGST SKGVLLNFED AGGKVWRFRY  240
SYWNSSQSYV LTKGWSRFVK EKGLRAGDIV SFQRSTAPDN QLYIDWKSRN INNGSNAAAA  300
VVAVSGRAQP VVMVRLFGVN IFEAAPSDAA IDGYGSCSGK RMREMELLGL DCSKKQRVIG  360
AL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5718429011118DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.E00306.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012846076.10.0PREDICTED: LOW QUALITY PROTEIN: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-146RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A022QMP30.0A0A022QMP3_ERYGU; Uncharacterized protein
STRINGMigut.E00306.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-147related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]