PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.E00306.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | RAV | ||||||||
Protein Properties | Length: 363aa MW: 39915.6 Da PI: 9.7209 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.9 | 1.6e-10 | 58 | 99 | 1 | 48 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 s++kGV + +grW A+I++ ++r++lg+f ++eAa+a++ Migut.E00306.1.p 58 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDT 99 689***9788.8*********3.....5**********99******96 PP | |||||||
2 | B3 | 102.8 | 1.8e-32 | 187 | 288 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+ tpsdv+k++rlv+pk++ae+h +g++ +++ l +ed g++W+++++y+++s++yvltkGW++Fvk++gL++gD+v F+++ + Migut.E00306.1.p 187 FEKAVTPSDVGKLNRLVIPKQHAERHfplqSGSTSKGVLLNFEDAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLRAGDIVSFQRSTAPD 279 89****************************888899***************************************************887788 PP E..EEEEE- CS B3 90 felvvkvfr 98 +l++ + + Migut.E00306.1.p 280 NQLYIDWKS 288 888888766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.24E-20 | 58 | 112 | No hit | No description |
Pfam | PF00847 | 3.7E-6 | 58 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-13 | 58 | 113 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.8E-23 | 59 | 119 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.0E-17 | 59 | 113 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.909 | 59 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 8.9E-42 | 178 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.55E-30 | 185 | 287 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.37E-29 | 186 | 275 | No hit | No description |
SMART | SM01019 | 3.5E-25 | 187 | 290 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-29 | 187 | 289 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.819 | 187 | 290 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MDLSFADEST TSETVSITPA VAASKSPPES LCRVGSGASA ITDAENGVEA ESRKLPSSRF 60 KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAARAYDTR RRFRGRDAVT NFKPLSETQE 120 DGVETAFLNT HSKAEIVDML RKHTYGDELE QSRRSYNSNG RRTAEDGPFG FSGRGGDRAA 180 KAREQLFEKA VTPSDVGKLN RLVIPKQHAE RHFPLQSGST SKGVLLNFED AGGKVWRFRY 240 SYWNSSQSYV LTKGWSRFVK EKGLRAGDIV SFQRSTAPDN QLYIDWKSRN INNGSNAAAA 300 VVAVSGRAQP VVMVRLFGVN IFEAAPSDAA IDGYGSCSGK RMREMELLGL DCSKKQRVIG 360 AL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-57 | 184 | 290 | 11 | 118 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00139 | DAP | Transfer from AT1G13260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.E00306.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012846076.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Swissprot | Q9ZWM9 | 1e-146 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | A0A022QMP3 | 0.0 | A0A022QMP3_ERYGU; Uncharacterized protein | ||||
STRING | Migut.E00306.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2958 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-147 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
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Phytozome | Migut.E00306.1.p |
Publications ? help Back to Top | |||
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