PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D02231.1.p
Common NameMIMGU_mgv1a021154mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ARF
Protein Properties Length: 615aa    MW: 67240.2 Da    PI: 7.6081
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D02231.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.2e-23110211199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+lt+sd+++ g +++p+ +ae++         ++ +   ++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   +
  Migut.D02231.1.p 110 FAKTLTQSDANNGGGFSVPRFCAETIfppldytADPPVQ--NVIAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--R 198
                       89*********************999****998666666..699**********************************************..4 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       ++++ l+v+++r+
  Migut.D02231.1.p 199 SENGDLCVGIRRA 211
                       478889****996 PP
2Auxin_resp110.41.8e-36273353483
        Auxin_resp   4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+++++FevvY+Prast+eF+vk+++v++a++v++  GmRfkm fetedss++++ +Gt++ v+ +dp+rWpnS+Wr+L+
  Migut.D02231.1.p 273 MAANGQAFEVVYYPRASTPEFCVKASSVNSAMRVQWFSGMRFKMPFETEDSSRISWfMGTIANVQVVDPLRWPNSPWRMLQ 353
                       6899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-37103216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-29107216IPR015300DNA-binding pseudobarrel domain
CDDcd100172.00E-21109210No hitNo description
PfamPF023624.5E-22110211IPR003340B3 DNA binding domain
SMARTSM010192.0E-22110212IPR003340B3 DNA binding domain
PROSITE profilePS5086313.056110212IPR003340B3 DNA binding domain
PfamPF065079.0E-32273353IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MEKSLDSELW HACAGGMVQM PPVNSKVFYF PQGHAEHTLT TVDFGALPKI PPMILCRVIA  60
VKFLADAETD EVHAKIRLIP VGKNEHGFDD NGRDLGIAGS AASGEKPTSF AKTLTQSDAN  120
NGGGFSVPRF CAETIFPPLD YTADPPVQNV IAKDVHGETW KFRHIYRGTP RRHLLTTGWS  180
TFVNQKKLVA GDSIVFLRSE NGDLCVGIRR AKRGGSGGGQ DSSSSSGWNS GGAGNFGFSP  240
FLKEDEIHRG VCNGNLREKG KIRPESVVEA TFMAANGQAF EVVYYPRAST PEFCVKASSV  300
NSAMRVQWFS GMRFKMPFET EDSSRISWFM GTIANVQVVD PLRWPNSPWR MLQVTWDEPD  360
LLQNVKCVSP WLVEMVSNMP IHLSPFSPPR KKLRLPHHTD FQLDGQFQMP SFSGNPLGPS  420
SPLCCLSDNI LTAGIQGARH AQIGVPFSDL HLSNNKLHMG LFPPSFMHLD SRPRIPHSTN  480
VGSGNENISC LLSMGNSSQK SDKPDGPKKP RFVLFGQPIL TEQQMSSELS SKVGQGKNSL  540
DLSSAQFLRK PGYHSSEIGL DTGHCKVFLD SEDVGRTLDL SFLGSYEEKL ITGLPTAERG  600
LDSSNQTGPL SIYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-84537451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D02231.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012827715.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A022PX460.0A0A022PX46_ERYGU; Auxin response factor (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]