PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.D01476.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 258aa MW: 28253.3 Da PI: 9.2598 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.9 | 1.7e-20 | 22 | 69 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + en+sn qvtfskRr g++KKA+EL++L++ ++av++fs+ gk + + Migut.D01476.1.p 22 KMENESNLQVTFSKRRVGLFKKASELCTLTGSKAAVVVFSPGGKAHSF 69 679*****************************************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-30 | 13 | 72 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.595 | 13 | 73 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.49E-24 | 14 | 86 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.49E-30 | 14 | 88 | No hit | No description |
PRINTS | PR00404 | 1.1E-15 | 15 | 35 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-22 | 22 | 69 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-15 | 35 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-15 | 50 | 71 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
MNPTNNSQPK KHKGRRKVNM EKMENESNLQ VTFSKRRVGL FKKASELCTL TGSKAAVVVF 60 SPGGKAHSFG HPDVNTIADQ YLNPNSQSGN NNAQHSSVPI EGQEYLAQHG QFLTLNSRPA 120 GNHAAAQSNH VQQSSTLTKD QQYLALVESQ IRAEKARGEE MDRIRKASLD KLNYQQLEHL 180 RGAIMEFSKK LEIQVDKGVN STMGCDVVRG TYPGQDFGAS SSSHGNVVPY TTVIPYDQGA 240 TSGDAEEFNN GYGHRNF* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.D01476.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012842355.1 | 1e-177 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A022R0V1 | 1e-179 | A0A022R0V1_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA19796 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-36 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.D01476.1.p |