PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D00357.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C2H2
Protein Properties Length: 446aa    MW: 49372.7 Da    PI: 9.0722
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D00357.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-0590112123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ C+k F r  nL+ H r H
  Migut.D00357.1.p  90 FVCEVCNKGFQRDQNLQLHRRGH 112
                       89*******************88 PP
2zf-C2H213.30.00024166188123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k++  +s+ k H +t+
  Migut.D00357.1.p 166 WKCDKCSKVYAVQSDWKAHSKTC 188
                       58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.2E-689112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.08E-689112No hitNo description
SMARTSM003550.02190112IPR015880Zinc finger, C2H2-like
PfamPF121718.3E-590112IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9790112IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SMARTSM00355300131161IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4154187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.08E-6161186No hitNo description
SMARTSM00355130166186IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MFPTMMNNIS DSLTSDESSS IISSSCPASR VQLQHNFGTL SSIIMLPHHN SLTSEHKIIT  60
KKKRNLPGNP DPDAEVIALS PATLMATNRF VCEVCNKGFQ RDQNLQLHRR GHNLPWKLKQ  120
RSGKEIKKRA YVCPEATCLH HHPSRALGDL TGIKKHYCRK HGEKKWKCDK CSKVYAVQSD  180
WKAHSKTCGT REYRCDCGAL FSRKDSFITH RAFCDALAEE TARISAATNS IILPPNPNIN  240
INNNTTTQQY FHFEPQNLHP PPPLHQFSHR HISNQWGPPS PQNRLLVHIK HEDEDTNIIN  300
SNTNTNTNNN NNMPLISSPL YQNRSPMMTS VPFGDFHVTS GLPPLSATAL LQKAATMGGG  360
AMGQVSSTMA HLDMHVAAAS SQWRKSSTGN TDGFTRDFLG LTAGDQCTST TTASGGAGNM  420
RELLLHTAAY DHNSALKHQS DLFMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-36162229370Zinc finger protein JACKDAW
5b3h_F6e-36162229370Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D00357.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831802.10.0PREDICTED: zinc finger protein MAGPIE
TrEMBLA0A022S5840.0A0A022S584_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-111C2H2 family protein