PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

ERF

Protein Properties

Length: 216aa MW: 23043.6 Da PI: 8.1959

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.C00778.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61	2.6e-19	39	88	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r r++lg+f+t eAa a++aa++kl+g Migut.C00778.1.p 39 TYKGVRQRT-WGKWVAEIREP---N-RgSRVWLGTFDTSHEAAVAYDAAARKLYG 88 69**999.******8...3.35***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.33E-20	38	98	No hit	No description
PROSITE profile	PS51032	22.326	39	96	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.4E-30	39	97	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.24E-21	39	97	IPR016177	DNA-binding domain
SMART	SM00380	9.2E-35	39	102	IPR001471	AP2/ERF domain
Pfam	PF00847	1.5E-13	39	88	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.7E-10	40	51	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.7E-10	62	78	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MAAAAAAPAE EKKVRKLAQA SSRKGCMRGK GGPENAACTY KGVRQRTWGK WVAEIREPNR 60 GSRVWLGTFD TSHEAAVAYD AAARKLYGPD AKVNLPHLCD TAAATAAANN QTPALAQAAA 120 PAKVENQECY NYNYNYNYNP NTNLTSGTAN FNNGGGGGGE YVSASGILKK LNVSLPDVDD 180 SHLWAEAAKD TSFQMVHEQE HCGKDGNGLP FTWLY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-16	40	96	6	63	ATERF1
3gcc_A	2e-16	40	96	6	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269\|PubMed:11798174}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00240	DAP	Transfer from AT1G75490	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.C00778.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high-salt stress. {ECO:0000269\|PubMed:11798174}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012842812.1	1e-159	PREDICTED: dehydration-responsive element-binding protein 2D
Swissprot	Q9LQZ2	5e-51	DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBL	A0A022QVY8	1e-158	A0A022QVY8_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3155	22	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75490.1	2e-51	ERF family protein

Link Out ? help Back to Top
Phytozome	Migut.C00778.1.p
Entrez Gene	105963005

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]