PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.C00746.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ZF-HD | ||||||||
Protein Properties | Length: 273aa MW: 29275.8 Da PI: 9.0407 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100.2 | 1.4e-31 | 58 | 112 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++ Y+eClkNhAa++Gg+++DGCgEfmps g++gt +alkCaACgCHRnFHR+e++ Migut.C00746.1.p 58 RISYRECLKNHAANIGGNVTDGCGEFMPS-GDDGTLEALKCAACGCHRNFHRKEHH 112 689*************************9.999********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.6E-29 | 59 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-21 | 61 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.1E-29 | 61 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.54 | 61 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.46E-15 | 189 | 260 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-27 | 196 | 262 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.1E-27 | 203 | 259 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MTSLPGEEKD AMRMSSSLGG YNINSVENNT VTPVEKPRIT DPFSGGSKPK PGGANHPRIS 60 YRECLKNHAA NIGGNVTDGC GEFMPSGDDG TLEALKCAAC GCHRNFHRKE HHHPHGGGES 120 ATAGAMVHPL QLPPPLPSPS MSQHRAGGGA HHWSAMVQPV KMAYGSGGGG AGSAGTDSSS 180 EELNFNTYHS SGVAPPPPQF VTKKRHRTKF TTEQKGKMLE LAEKLGWRIP REDDAEVQRF 240 CAEFGVKRQV FKVWMHNNKS SSSSKKNPQE LI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 6e-24 | 203 | 264 | 17 | 78 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.C00746.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012846086.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 5 | ||||
TrEMBL | A0A022RZP3 | 1e-153 | A0A022RZP3_ERYGU; Uncharacterized protein | ||||
STRING | Migut.C00746.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 2e-50 | homeobox protein 31 |
Link Out ? help Back to Top | |
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Phytozome | Migut.C00746.1.p |