PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B01573.1.p
Common NameMIMGU_mgv1a020120mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family SBP
Protein Properties Length: 413aa    MW: 45895.7 Da    PI: 8.3056
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B01573.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.71.1e-40164240177
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                       +CqvegC + l +akeyhrrhkvCe+h+kapvv+v g++qrfCqqCsrfh++ efDe+krsCrrrLa+hnerrrk++
  Migut.B01573.1.p 164 RCQVEGCGVVLVDAKEYHRRHKVCEMHAKAPVVVVLGIQQRFCQQCSRFHRVAEFDETKRSCRRRLAGHNERRRKTS 240
                       6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.1E-34158226IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.342162239IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.1E-38163242IPR004333Transcription factor, SBP-box
PfamPF031102.4E-32165238IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MEYHWSSLIN NSKSSSSSTT ADCNTPTFNN GHHAWDSFNN AAGNFSRAAG AEQANWSYPL  60
HYNNSVSYYS NPSAARQVVE AGAAAYQAVA LREHEQEKMG GGGAAAANRC YQLDPHLTCL  120
KLGKRQYFED VMMAAAAPPP PAAAAKKGKP YYAVDGVQAA AVPRCQVEGC GVVLVDAKEY  180
HRRHKVCEMH AKAPVVVVLG IQQRFCQQCS RFHRVAEFDE TKRSCRRRLA GHNERRRKTS  240
LNLDNQHHQF SHKLSLQGIS RHDHDDGVIN NNNIRGESCA LSLLSSTNYY WTNFNTATSA  300
SRHLPETCSA ALRDLIAENR ASTSAFNKNH HLITNYPNNN NNHNQMDDYY NYKLNGSINN  360
RPGSNPHGNG AGHVTLDLME AQNSELGFMS TKERDEHQQE CSELWKVPLG YR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-301652381184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B01573.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843550.10.0PREDICTED: squamosa promoter-binding-like protein 17
TrEMBLA0A022QX910.0A0A022QX91_ERYGU; Uncharacterized protein
STRINGMigut.B01573.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134081417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.14e-35squamosa promoter binding protein-like 9