PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B00961.1.p
Common NameMIMGU_mgv1a008616mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family TALE
Protein Properties Length: 341aa    MW: 38758.8 Da    PI: 4.8602
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B00961.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.3e-092723052255
                       SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        +yp++ee+ +L++ +gL+++q+ +WF N+R ++
  Migut.B00961.1.p 272 WPYPTEEEKNRLSEMTGLDQKQINNWFINQRKRH 305
                       59*****************************885 PP
2ELK37.84e-13225246122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELK++L+rKYsgyL++Lk+EF+
  Migut.B00961.1.p 225 ELKEMLMRKYSGYLSTLKKEFL 246
                       9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.8E-2077121IPR005540KNOX1
PfamPF037909.4E-2079119IPR005540KNOX1
SMARTSM012562.7E-21125176IPR005541KNOX2
PfamPF037912.6E-21129175IPR005541KNOX2
PROSITE profilePS5121311.051225245IPR005539ELK domain
PfamPF037894.7E-10225246IPR005539ELK domain
SMARTSM011886.0E-7225246IPR005539ELK domain
PROSITE profilePS5007113.102245308IPR001356Homeobox domain
SuperFamilySSF466892.91E-19247315IPR009057Homeodomain-like
SMARTSM003891.6E-13247312IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.2E-26250310IPR009057Homeodomain-like
CDDcd000866.58E-13257309No hitNo description
PfamPF059208.9E-17265304IPR008422Homeobox KN domain
PROSITE patternPS000270283306IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDELYRFHSS INSNFLGDGS NTSSNSNNNN SNSNNIAGFS DHYYINPHSN NNPEIMVLTA  60
ADHEVATTTT GLAEMSDLIK AQIANHPLYP ELLSAYIDCR KVGAPEEMAS LLEEINTENN  120
HTTTHHQIIG ADPQLDDFMR SYCEVLQKYK EELSKPFDEA TNFLSIIESQ LTLLCNQTLP  180
SSTHPFHSDE VGVLSEENMM NLEGVEYNSN NNSNEGDNNT NNNKELKEML MRKYSGYLST  240
LKKEFLKKRK KGKLPKDALT ALLDWWNTHY RWPYPTEEEK NRLSEMTGLD QKQINNWFIN  300
QRKRHWRPSE DMRFALMEGV SDGSTLFDAN NNNNNGGLGT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240249LKKEFLKKRK
2246250KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B00961.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840397.10.0PREDICTED: homeobox protein knotted-1-like 1
SwissprotQ9FP295e-94KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A022R2M10.0A0A022R2M1_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.18e-67KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]