PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.A00224.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family CPP
Protein Properties Length: 487aa    MW: 53069.2 Da    PI: 9.0456
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.A00224.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.75.3e-14141179241
               TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                       ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C++C N+ e
  Migut.A00224.1.p 141 KQKQCNCKNSRCLKLYCECFASGSYCDG-CNCTNCYNNLE 179
                       89**************************.********976 PP
2TCR461e-14218255340
               TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                       +kgCnCkks Clk+YC+Cf+a+  Cs++CkC dCkN e
  Migut.A00224.1.p 218 HKGCNCKKSGCLKRYCDCFQANILCSDRCKCCDCKNYE 255
                       79**********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011149.9E-15140180IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.204141256IPR005172CRC domain
PfamPF036381.1E-10142177IPR005172CRC domain
SMARTSM011147.7E-15216257IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.2E-11219254IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MEQGETAAGA LAASPVVRQL DFTINFKSTA ANANANANLI LPEHPQAQLQ SKLLALIEQK  60
QVHANGRAQS PPRTVSQRKL PPGKIVMPPK KNSRRELSQI VGQTKSPAIA PKPALKPLLK  120
MESPKSRERS NLEQNDGTPK KQKQCNCKNS RCLKLYCECF ASGSYCDGCN CTNCYNNLEN  180
EPYKKESVRA LLEKNPDAFK PKISGSPHGA ADGGVEYHKG CNCKKSGCLK RYCDCFQANI  240
LCSDRCKCCD CKNYEGSKER NAHFHHHSSK SMALIQLAAN AAINEAIGIP SKTTRNNRQI  300
IFGTASNKQQ LASWLPKYPQ ETCSTSKSPL SAKQKASVSG LSKSSYKSPL AGILQPQHVK  360
DLCKVLVEVS AEAAAHSISQ ERKPTNNSTN ANEAEKNPAS SSHESDTSDN RPLSPGTLAL  420
MCDEQDATFM AANAPQSTTT EPNTRTNNTK PDLTYVDQER LVLTRFCSFL NKLITCGSIE  480
EKKIEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-291332652132Protein lin-54 homolog
5fd3_B3e-291332652132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.A00224.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858009.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-110TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A022PXC50.0A0A022PXC5_ERYGU; Uncharacterized protein
STRINGMigut.A00224.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.13e-96Tesmin/TSO1-like CXC domain-containing protein