PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g468920.1
Common NameMTR_8g468920
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family AP2
Protein Properties Length: 401aa    MW: 45288.6 Da    PI: 9.6976
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g468920.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.31.4e-1171127155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GV++++++gr++A+++d  ++n   k+k  + g +  +e Aa+a++ a++k++g
  Medtr8g468920.1  71 SRFRGVSRHRWTGRYEAHLWDkGTWNPtqKKKGKQ-GAYNDEEAAARAYDLAALKYWG 127
                      789******************87777785557777.666666**************98 PP
2AP256.47.6e-18170221155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++ +grW+A+I   +   g +k+ +lg++gt eeAa+a++ a+ +++g
  Medtr8g468920.1 170 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAARAYDIAAIEYRG 221
                      89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-771127IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-1471136IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-1172135IPR001471AP2/ERF domain
PROSITE profilePS5103217.93872135IPR001471AP2/ERF domain
SMARTSM003809.0E-1872141IPR001471AP2/ERF domain
PRINTSPR003672.9E-57384IPR001471AP2/ERF domain
CDDcd000186.27E-26170231No hitNo description
PfamPF008472.8E-13170221IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18170231IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.9E-18171230IPR001471AP2/ERF domain
PROSITE profilePS5103218.742171229IPR001471AP2/ERF domain
SMARTSM003801.4E-25171235IPR001471AP2/ERF domain
PRINTSPR003672.9E-5211231IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MEEVSNVKSE LSPRSHRLLM LDTDSVVTTK SVKRRRRESS VLGGNEQQGD VSEIQQPVSG  60
QSTATTVKRS SRFRGVSRHR WTGRYEAHLW DKGTWNPTQK KKGKQGAYND EEAAARAYDL  120
AALKYWGTST FTNFPVPDYE KEIEIMINMT KEEYLASLRR RSSGFSRGVS KYRGVARHHH  180
NGRWEARIGR VFGNKYLYLG TYGTQEEAAR AYDIAAIEYR GINAVTNFDL STYIRWLRPG  240
PNPTTSQEQK SNTEPQPFAA TNFIQTRGNM DASNSTINPK KLLQVENTKQ KESFNSLMTP  300
LSPCSKPDSP TALGLLLKSS MFRELMQRNL NSSNEDEEIE LKYPQEGIAG VFDIDNNSNT  360
YLCSSNISRL PNLVSSEERP LPMYHGTMQS LWNGPSNISN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196104PTQKKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g468920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0931681e-134BT093168.1 Soybean clone JCVI-FLGm-24O15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024628345.10.0AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A072TQP30.0A0A072TQP3_MEDTR; AP2-like ethylene-responsive transcription factor
STRINGXP_004514774.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-65AP2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]