PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g104930.1
Common NameMTR_8g104930
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 464aa    MW: 51578 Da    PI: 7.2803
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g104930.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015109131123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+Cp+C+++F++ ++ + H  ++
  Medtr8g104930.1 109 YECPICKQPFRSEDEVTEHVESC 131
                      99*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1435031.12E-18170255IPR018997PUB domain
CDDcd092128.76E-21174258No hitNo description
PfamPF094097.3E-17176248IPR018997PUB domain
SMARTSM005801.2E-20176243IPR018997PUB domain
SuperFamilySSF542369.04E-13323436IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.901.8E-8351436No hitNo description
PROSITE profilePS500339.898352436IPR001012UBX domain
PfamPF007891.2E-4354402IPR001012UBX domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MDDVKDKMKG FIKKVNNPFT SSSSGKFKGQ GRVLGSSSSS STPANSIPTP THRPSPSQNP  60
NPKPKPTPPI ASDQSKIDKP RKPADGFDPF DSLVTSSQRS QNGYSLNVYE CPICKQPFRS  120
EDEVTEHVES CLSNPIENDD VDEKCVSKLK ESQVSESNTE LEICIGTYVS GNPSQGSVDI  180
VLKLLRNIVK EPDNVKFRKI RMGNPKIKEA IGEVIGGVEL LSLLGFELKE ENGETWALME  240
VPTEEKVNLI KKAIVLLEPQ LVQDTPKREN STPTVSTEKV AEAEPKKIDR QVKVFFAVSE  300
SVAARIELPD SFYKRSAEEV RREAELRRKK IEESQLLIPK SLKEKQAKAA KRRYTRTIIR  360
IQFPDGVVLQ GVFAPWEPTT ALYEFVSSAL KESCLEFELM HPVVVQRRVI PCFPKAGQKA  420
KTIEEEDLVP SALIKFKPLE TDSVVFTGLK NELLEISEPL VNG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ifw_A3e-1230743623146Tether containing UBX domain for GLUT4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.157620.0root| stem
Functional Description ? help Back to Top
Source Description
UniProtFacilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269|PubMed:19176722, ECO:0000269|PubMed:23301616, ECO:0000269|Ref.8}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g104930.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269|PubMed:19176722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1509790.0AC150979.15 Medicago truncatula clone mth2-115a17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630914.10.0plant UBX domain-containing protein 2
SwissprotQ9ZU930.0PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBLG7LAI20.0G7LAI2_MEDTR; Plant UBX domain protein
STRINGAET053900.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89442529
Publications ? help Back to Top
  1. Suzuki T,Park H,Till EA,Lennarz WJ
    The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway.
    Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7
    [PMID:11587532]
  2. Rancour DM,Park S,Knight SD,Bednarek SY
    Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48.
    J. Biol. Chem., 2004. 279(52): p. 54264-74
    [PMID:15498773]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  4. Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC
    Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction.
    Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45
    [PMID:23301616]