PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g104930.1 | ||||||||
Common Name | MTR_8g104930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C2H2 | ||||||||
Protein Properties | Length: 464aa MW: 51578 Da PI: 7.2803 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 109 | 131 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C+++F++ ++ + H ++ Medtr8g104930.1 109 YECPICKQPFRSEDEVTEHVESC 131 99*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF143503 | 1.12E-18 | 170 | 255 | IPR018997 | PUB domain |
CDD | cd09212 | 8.76E-21 | 174 | 258 | No hit | No description |
Pfam | PF09409 | 7.3E-17 | 176 | 248 | IPR018997 | PUB domain |
SMART | SM00580 | 1.2E-20 | 176 | 243 | IPR018997 | PUB domain |
SuperFamily | SSF54236 | 9.04E-13 | 323 | 436 | IPR029071 | Ubiquitin-related domain |
Gene3D | G3DSA:3.10.20.90 | 1.8E-8 | 351 | 436 | No hit | No description |
PROSITE profile | PS50033 | 9.898 | 352 | 436 | IPR001012 | UBX domain |
Pfam | PF00789 | 1.2E-4 | 354 | 402 | IPR001012 | UBX domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MDDVKDKMKG FIKKVNNPFT SSSSGKFKGQ GRVLGSSSSS STPANSIPTP THRPSPSQNP 60 NPKPKPTPPI ASDQSKIDKP RKPADGFDPF DSLVTSSQRS QNGYSLNVYE CPICKQPFRS 120 EDEVTEHVES CLSNPIENDD VDEKCVSKLK ESQVSESNTE LEICIGTYVS GNPSQGSVDI 180 VLKLLRNIVK EPDNVKFRKI RMGNPKIKEA IGEVIGGVEL LSLLGFELKE ENGETWALME 240 VPTEEKVNLI KKAIVLLEPQ LVQDTPKREN STPTVSTEKV AEAEPKKIDR QVKVFFAVSE 300 SVAARIELPD SFYKRSAEEV RREAELRRKK IEESQLLIPK SLKEKQAKAA KRRYTRTIIR 360 IQFPDGVVLQ GVFAPWEPTT ALYEFVSSAL KESCLEFELM HPVVVQRRVI PCFPKAGQKA 420 KTIEEEDLVP SALIKFKPLE TDSVVFTGLK NELLEISEPL VNG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ifw_A | 3e-12 | 307 | 436 | 23 | 146 | Tether containing UBX domain for GLUT4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.15762 | 0.0 | root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269|PubMed:19176722, ECO:0000269|PubMed:23301616, ECO:0000269|Ref.8}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g104930.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269|PubMed:19176722}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC150979 | 0.0 | AC150979.15 Medicago truncatula clone mth2-115a17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003630914.1 | 0.0 | plant UBX domain-containing protein 2 | ||||
Swissprot | Q9ZU93 | 0.0 | PUX2_ARATH; Plant UBX domain-containing protein 2 | ||||
TrEMBL | G7LAI2 | 0.0 | G7LAI2_MEDTR; Plant UBX domain protein | ||||
STRING | AET05390 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8944 | 25 | 29 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g104930.1 |
Entrez Gene | 11412894 |
Publications ? help Back to Top | |||
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