PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g091650.3
Common NameMTR_8g091650
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 395aa    MW: 45231.7 Da    PI: 7.3243
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g091650.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.22.6e-11110149442
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee.kvkeLeaeN 42 
                      +k +rr+++NReAAr+sR++Kka i++Le  + k L+ e 
  Medtr8g091650.3 110 IKMQRRLAQNREAARKSRLKKKAHIQQLEScRLKLLQVEQ 149
                      689*************************975666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.4E-6107188IPR004827Basic-leucine zipper domain
PfamPF001703.7E-8110148IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-7110139No hitNo description
Gene3DG3DSA:1.20.5.1708.2E-7111151No hitNo description
PROSITE patternPS000360114129IPR004827Basic-leucine zipper domain
PfamPF141442.6E-25196271IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDPSSSSQFV SSRNIGVYDP IHQFTIWEEH FKSNGDSSVY EPEMKLNNQS EDASFGILGT  60
SIKYDHQEAN KVTNKVRFVL LLAWYHGEFV KITVSYRDFA KATLCRFNII KMQRRLAQNR  120
EAARKSRLKK KAHIQQLESC RLKLLQVEQE LDHTKQGLYI GGGLDSNNLG FAGSVNSEIA  180
TFKMEYEHWV EELNRQMLEL KGALSAHSSD IRIGELVNGL MNHYFKLFCM KSDAAKVDVF  240
YVITGMWKTT AEGFFLWIGG FRPSELLKVL VPLIEPLTEE QRFDAYNLEK SCRQAEDALS  300
QGMEKLQGML VDTVAAGQLV EGTYIPQMDI AIERLEALAS FVNQADHLRQ ETLQQMSRIL  360
TVRQTARWLL ALGEYFQRLR DLSKLWTNRP REPA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.142230.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g091650.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1407500.0BT140750.1 Medicago truncatula clone JCVI-FLMt-5N7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630094.20.0transcription factor TGA4 isoform X1
RefseqXP_024629283.10.0transcription factor TGA4 isoform X1
SwissprotQ392371e-148TGA1_ARATH; Transcription factor TGA1
TrEMBLG7LB900.0G7LB90_MEDTR; BZIP family transcription factor
STRINGAET045690.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109634104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-151bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  5. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  6. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]