PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g073050.1 | ||||||||
Common Name | MTR_8g073050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB_related | ||||||||
Protein Properties | Length: 226aa MW: 24791 Da PI: 9.6838 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.4 | 9.1e-10 | 104 | 144 | 3 | 43 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 +W++ E++l++ + ++G+g W++Ia+ +t+ q+ks+ Medtr8g073050.1 104 SWSQLEHDLFLMGLIEYGKGKWSKIAKNYVSSKTRQQVKSY 144 7*****************************999******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.435 | 100 | 153 | IPR017884 | SANT domain |
SMART | SM00717 | 6.0E-6 | 101 | 151 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.45E-8 | 104 | 149 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.14E-8 | 104 | 144 | No hit | No description |
Pfam | PF00249 | 7.7E-8 | 104 | 144 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-8 | 104 | 144 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MPIEIIDLTS SPDSPPSTPV SLSNLPTILN FAPVSTNPNL HHQIHPHQHQ TTLFVPPPPG 60 FETPQIATGW PQPGMYHSQI AMVLKPLPEP KTSQFSNGAR LGVSWSQLEH DLFLMGLIEY 120 GKGKWSKIAK NYVSSKTRQQ VKSYGLSFFM YLPATFVHGF RKRKQIANPS NSASKRNRNS 180 PSAPYYGEEA SSSNTNNYEA ITSMTLPSAS DDGGVDLELR LGLSK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g073050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC174379 | 0.0 | AC174379.16 Medicago truncatula chromosome 8 clone mth2-57p18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003629092.1 | 1e-166 | uncharacterized protein LOC11445327 | ||||
TrEMBL | G7L8N4 | 1e-164 | G7L8N4_MEDTR; MYB-like DNA-binding domain protein | ||||
STRING | AET03568 | 1e-165 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14942 | 6 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-13 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g073050.1 |
Entrez Gene | 11445327 |
Publications ? help Back to Top | |||
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