PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g069160.1 | ||||||||
Common Name | MTR_8g069160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 260aa MW: 29439.4 Da PI: 6.7899 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.1 | 9.2e-33 | 68 | 208 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......s 80 lp+G++F+P+d+e++ ++L++kv + ++++ +++ +i++++P++Lp vk++ + +fF++ +k+y+tg+rk+r+++ + Medtr8g069160.1 68 LPAGVKFDPNDQEIL-QHLEAKVLFDVpklhplIDEFIpTLEGEnGICYTHPEKLP-GVKKDGQIRHFFHRPSKAYTTGTRKRRKVQtdeegsE 159 799***********9.99****998885564332222222333336**********.667777788******************7444565557 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v+ +g +g kk+Lv+y gr++k+ekt+Wvmh+y+l Medtr8g069160.1 160 TRWHKTGKTRPVII-DGVMKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 208 78************.99************6658***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-35 | 64 | 223 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.723 | 68 | 227 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-14 | 69 | 208 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MTWCNDSDDQ DRGIELITST VIPGTSNESP LVTDDETKPT EVRTLTCPSC GHNIEFQDQG 60 GINELPGLPA GVKFDPNDQE ILQHLEAKVL FDVPKLHPLI DEFIPTLEGE NGICYTHPEK 120 LPGVKKDGQI RHFFHRPSKA YTTGTRKRRK VQTDEEGSET RWHKTGKTRP VIIDGVMKGF 180 KKILVLYTNY GRQKKPEKTN WVMHQYHLGS NEEEKDGELV VSKKILEYLS SSERRLACNS 240 VIRFMYSSVN FFLSLMASS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.15072 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g069160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC142143 | 0.0 | AC142143.29 Medicago truncatula chromosome 8 clone mth2-25c22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003628924.1 | 0.0 | NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 1e-108 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | G7LJA4 | 0.0 | G7LJA4_MEDTR; NAC transcription factor-like protein | ||||
STRING | AET03400 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-111 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g069160.1 |
Entrez Gene | 11428266 |
Publications ? help Back to Top | |||
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