PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr8g036235.2

Common Name

MTR_8g036235

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

bHLH

Protein Properties

Length: 403aa MW: 45241.2 Da PI: 7.8452

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr8g036235.2	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.6	3e-05	328	352	6	30
HHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 6 nerErrRRdriNsafeeLrellPka 30 +++Er RR ri ++ +L++l P+a Medtr8g036235.2 328 SIAERERRIRISARIKKLQDLFPNA 352 689********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	0.00195	326	363	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.6E-4	327	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MSIVYTQAFN YSEGGSMKNT EMDSKFGYSQ TQQHCLQNNS GLTRYRSAPS SLLTSLVDRS 60 IGFFNEETFR NENHQQQHYS TSTSSEMETM FTNSESFSVK QEEKDPFSHG IQYNDYSYGS 120 QNQINYQTQH NQGFPNGSLG VEDNVFDGSS NNCSNLIRQK SSPAEFFSNY SVDSGLGCAN 180 GQATTSTSGL HGTLNFSSRT SSCSIKMPLI VENEHEVLQA NCIKSRNMGN DNCITKSYMP 240 SFTNDYWDSS TFSAPKNASN KGEFMFSTSN ALETQNVDFG YQKLGLTHHL SLPSSSSKMA 300 TMEKFLHLQG SVPCKIRAKR GFATHPRSIA ERERRIRISA RIKKLQDLFP NADKVNILKI 360 WIDSEFSRIT MTPYYLVVFQ NVTFTKTTVA HRNIITLTVD PN*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MSIVYTQAFN YSEGGSMKNT EMDSKFGYSQ TQQHCLQNNS GLTRYRSAPS SLLTSLVDRS  60
IGFFNEETFR NENHQQQHYS TSTSSEMETM FTNSESFSVK QEEKDPFSHG IQYNDYSYGS  120
QNQINYQTQH NQGFPNGSLG VEDNVFDGSS NNCSNLIRQK SSPAEFFSNY SVDSGLGCAN  180
GQATTSTSGL HGTLNFSSRT SSCSIKMPLI VENEHEVLQA NCIKSRNMGN DNCITKSYMP  240
SFTNDYWDSS TFSAPKNASN KGEFMFSTSN ALETQNVDFG YQKLGLTHHL SLPSSSSKMA  300
TMEKFLHLQG SVPCKIRAKR GFATHPRSIA ERERRIRISA RIKKLQDLFP NADKVNILKI  360
WIDSEFSRIT MTPYYLVVFQ NVTFTKTTVA HRNIITLTVD PN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.17390	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr8g036235.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013445033.1	0.0	transcription factor bHLH130
Refseq	XP_024629575.1	0.0	transcription factor bHLH130
TrEMBL	A0A072TNH3	0.0	A0A072TNH3_MEDTR; Transcription factor bHLH122-like protein
STRING	XP_004510971.1	1e-178	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4005	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	2e-16	bHLH family protein

Link Out ? help Back to Top
Phytozome	Medtr8g036235.2
Entrez Gene	25501034

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]