PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g035530.1 | ||||||||
Common Name | MTR_8g035530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | FAR1 | ||||||||
Protein Properties | Length: 77aa MW: 9191.3 Da PI: 8.1887 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 24.9 | 6.7e-08 | 28 | 73 | 1 | 47 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 ++Y+ Y + GF +rk+ +k +g+i+ ++ C++eg+++++kk+ Medtr8g035530.1 28 QYYDIYEEFHGFVIRKDDVNKD-SDGNIVACRLICNREGESKNKKKQ 73 69****************9998.8888***************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.2E-6 | 28 | 73 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
MDTYKKIRKL TFDDIRGLRF DSEEKETQYY DIYEEFHGFV IRKDDVNKDS DGNIVACRLI 60 CNREGESKNK KKQSRY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g035530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC174347 | 1e-126 | AC174347.10 Medicago truncatula chromosome 8 clone mth2-173b11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | G7LCQ7 | 1e-47 | G7LCQ7_MEDTR; FAR1 DNA-binding domain protein | ||||
STRING | AET02124 | 2e-48 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9653 | 6 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 7e-09 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g035530.1 |
Entrez Gene | 11444582 |
Publications ? help Back to Top | |||
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