PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g028905.1
Common NameMTR_8g028905
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 594aa    MW: 66228.3 Da    PI: 6.0366
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g028905.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.1e-08505555147
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47 
                      r++WT e+++++ ++ ++++++      W+ I +t++ +++++ ++s+++++
  Medtr8g028905.1 505 RNSWTDEDEKRFWEVLQLYPPKrgsehFWDHIFETFP-NKSRETLVSYYFNV 555
                      789*****************99***************.***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101111.853173IPR001606ARID DNA-binding domain
SuperFamilySSF467742.49E-81575IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.609.3E-81572IPR001606ARID DNA-binding domain
PfamPF002492.0E-5505555IPR001005SANT/Myb domain
SuperFamilySSF466891.47E-5506556IPR009057Homeodomain-like
CDDcd001670.00271507555No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MKCLTWLLMF YDVGKVDLYK FLTAVDGKGG FDAVCDGELW DLVGEECGLG VNVGSTLKLV  60
FSKYKSVFES CVMKVGDAKV FDGSGLMGFE ADVNEFLSGQ GGNVVAGEKV KGKVDGANKV  120
KSANFESSVE KEVHSGNVMA GEKVEGGVDG ANEVKSANFE SGGVKEVHDV GFLDSGMMNR  180
GMVSDTDVGK LSEGNGDGME VVEDFDGGKI IVGTTEDASN LVKSDESGLL NVGENHDGDI  240
GDNSVPVLDL SGGDGTGSSH KRKREEALFD MMSWVTKTAS NPCDPEIVPI PEKPKWRAYS  300
NQEAWKRVLL FREAAFYKKK SSIEQQNWQS QKMHPSIYDD PTPTIYNLRE RRKRDKKLFE  360
KQKPSSRSSL SSSVLDKGDL DGTTSRRYVK RLLASRRSSF SRWASARICV GQKYQAQVPE  420
WTGPNPESDT KWFGTQVWPL AVANSQFLVE RDPIGRGRQD SCGCAVQGSV ECVRFHISEK  480
KAKAKLELGV AFYHWRFDKV GEDVRNSWTD EDEKRFWEVL QLYPPKRGSE HFWDHIFETF  540
PNKSRETLVS YYFNVYLLQR KAYHTRHTLG NIDIQSDDDE SESDMKKLFG RRG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349357ERRKRDKKL
2350355RRKRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g028905.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024628631.10.0uncharacterized protein LOC25500867
TrEMBLA0A072TN610.0A0A072TN61_MEDTR; ARID/bright DNA-binding domain protein
STRINGAET020290.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43731724
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]