PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g111320.1 | ||||||||
Common Name | MTR_7g111320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 692aa MW: 75982.1 Da PI: 6.4222 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.1 | 2.4e-16 | 442 | 488 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq Medtr7g111320.1 442 VHNLSERRRRDRINERMRALQELIPNC-----NKADKASMLDEAIEYLKSLQ 488 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.64E-10 | 434 | 492 | No hit | No description |
SuperFamily | SSF47459 | 5.63E-21 | 435 | 505 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.7E-21 | 435 | 496 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.844 | 438 | 487 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-13 | 442 | 488 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-17 | 444 | 493 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 692 aa Download sequence Send to blast |
MMPLHELYHM SKEKVDHKEM NNSCAPDQSS VPRNDLFELV WQNDQILVHG QSSNSNRAKM 60 TPTLPSHTLK GHDKYSGQHA NETNTRIGKF EDLDNGLNEI ITRSVSSSQD EDLMTMMPWL 120 NCAMDDEHSL HYSSCFVHEP GARTNDFAAT NKFSLLDRKS NCIQVFSDSH KQGILSKGSS 180 LAVEDFDTSE LKTSTNQLNM SSLLQQCQPS FESIRFRESG LSENNTKGNA NQHAPCEEIS 240 HVPSSSTVMN FTHFAKPAAI VKANLQNIGF SSSRSERVGA KNKDAAAIGR NPCESSKVDL 300 SVECPKSSAI HCHQSVEPSR VGLKPLEPKS LEKNTTVSTS ACKEDVSKVD QTSNQVLSES 360 SRKGQEVFKK CTELTVASSS VCSDNGVHRS SDDANQNLKR KNLDSEDSEW HSEDFEDESI 420 GVKRTDHGRG VTGSKKNRST EVHNLSERRR RDRINERMRA LQELIPNCNK ADKASMLDEA 480 IEYLKSLQLQ LQIMSMGGGG LYMPMTLPAG MQHMHAAHMF PFSPMSVAMQ MGLGVPQFQG 540 THLPVAHTSG LAALHGMVRP NPQMFGLQAG QGLHMPMPSA SMFSYPGEPV MNSSAVELNA 600 SGTAGLMETV ESASASKLKD QMPKLKDPMP NVNSQVMLNN KGCSSTNQMS IQCEATTGGL 660 EQSNVVLDSA HALLENDKRD NIEIEIDKSH E* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 446 | 451 | ERRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g111320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC157894 | 0.0 | AC157894.3 Medicago truncatula chromosome 7 clone mth2-85d15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003626129.2 | 0.0 | transcription factor PIF3 | ||||
TrEMBL | G7KVK4 | 0.0 | G7KVK4_MEDTR; Phytochrome-interacting factor 3.1 | ||||
STRING | AES82347 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5271 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 9e-37 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g111320.1 |
Entrez Gene | 11427226 |
Publications ? help Back to Top | |||
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