PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g095680.1
Common NameMTR_7g095680
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HSF
Protein Properties Length: 362aa    MW: 41783.6 Da    PI: 4.9346
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g095680.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.5e-36501422103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+++++ed+++++++sws+ g sfvv+d++ f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+k+ll 
  Medtr7g095680.1  50 FLTKTFDVVEDPTTSHIVSWSRGGASFVVWDPNAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDK---------WEFANEGFLRGHKHLLA 134
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +ikr++++
  Medtr7g095680.1 135 NIKRRRQT 142
                      *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.9E-3546139IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.2E-3946139IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.8E-6146139IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.4E-3250139IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-195073IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-1988100IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434089113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-19101113IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MNYLYPVKEE YLEIEATPSS LTYERGSDEG STVVIPRPME GLHEVGPPPF LTKTFDVVED  60
PTTSHIVSWS RGGASFVVWD PNAFSRDLLP RYFKHNNFSS FVRQLNTYGF RKIDPDKWEF  120
ANEGFLRGHK HLLANIKRRR QTSQPSTSQQ QSSHSQGHCV EVGRFGLDEE IDHLRRDKQV  180
LMMELVKLRQ QQHNTRSILQ AMEERLRGTE IKQQQMMAFL ARAMKNPAFI QQLLQQKEKR  240
KEIEDAITKK RRRPIEYGES SNGGDGRSSV RYGFEVSELE MLAMEMQGLG RGGGEHEEEI  300
EVFETNEKLN KELDEGFWEE LFSEKFESEL DILTSQDDDD DDDEDINVLS NRFGYLGSSS  360
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-254813918120Heat shock factor protein 1
5hdg_A2e-25481398110Heat shock factor protein 1
5hdn_A2e-25481398110Heat shock factor protein 1
5hdn_B2e-25481398110Heat shock factor protein 1
5hdn_C2e-25481398110Heat shock factor protein 1
5hdn_D2e-25481398110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238252KRKEIEDAITKKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.132980.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g095680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4551221e-106DQ455122.1 Medicago truncatula cDNA-AFLP fragment BC21M13_50 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024625396.10.0heat stress transcription factor A-6b isoform X1
RefseqXP_024625397.10.0heat stress transcription factor A-6b isoform X2
SwissprotQ9LUH81e-126HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A072U2930.0A0A072U293_MEDTR; Heat shock transcription factor A3
STRINGGLYMA19G34210.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-102heat shock transcription factor A6B
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]