PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g061190.1 | ||||||||
Common Name | MTR_7g061190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | AP2 | ||||||||
Protein Properties | Length: 154aa MW: 17365.3 Da PI: 8.0459 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.6 | 1.5e-13 | 72 | 122 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ +Aa+a+++a+ k +g Medtr7g061190.1 72 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSELDAARAYDKAAIKCNG 122 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.598 | 1 | 37 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-5 | 5 | 43 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-6 | 9 | 39 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-8 | 10 | 38 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.0E-9 | 72 | 122 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.55E-26 | 72 | 132 | No hit | No description |
SuperFamily | SSF54171 | 2.94E-17 | 72 | 131 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 15.435 | 73 | 130 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-31 | 73 | 136 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-16 | 73 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-7 | 74 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-7 | 112 | 132 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MQRQMRQCGF DTAHAAARAY DRAAIKFRGV DADINFNVSD YDEDIKQMNN FTKEEFVHIL 60 RRQSTGFSRG SSKYRGVTLH KCGRWEARMG QFLGKKYIYL GLFDSELDAA RAYDKAAIKC 120 NGREAVTNFE ASSYEGELTS QADNDGTTYL PLS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates progressively in panicles. Present at low levels in developing seeds, with a progressive decrease during development (PubMed:20713616). In spikelets, fades out progressively after anthesis (PubMed:25817414). {ECO:0000269|PubMed:20713616, ECO:0000269|PubMed:25817414}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots, seedlings and leaves and, to a lower extent, in stems, panicles and developing seeds (PubMed:20713616). Present in spikelets (PubMed:25817414). {ECO:0000269|PubMed:20713616, ECO:0000269|PubMed:25817414}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes (PubMed:20713616). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:20713616, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g061190.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development (Probable). Repressed by SRT1 via epigenetic histone H3K9 acetylation (H3K9ac) regulation (PubMed:27181944). {ECO:0000269|PubMed:27181944, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024626691.1 | 1e-105 | floral homeotic protein APETALA 2, partial | ||||
Swissprot | B8AXC3 | 6e-72 | AP21_ORYSI; APETALA2-like protein 1 | ||||
Swissprot | Q2TQ34 | 5e-72 | AP21_ORYSJ; APETALA2-like protein 1 | ||||
TrEMBL | G7L4I5 | 1e-111 | G7L4I5_MEDTR; AP2 domain transcription factor | ||||
STRING | AES79319 | 1e-111 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10581 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-72 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g061190.1 |
Entrez Gene | 11409387 |