PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g028890.1 | ||||||||
Common Name | MTR_7g028890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C2H2 | ||||||||
Protein Properties | Length: 221aa MW: 24573.8 Da PI: 6.5135 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.3e-05 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F+++ L H+++H Medtr7g028890.1 83 YSCKFCSRKFTSPQALGGHQSSH 105 99******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.96E-6 | 81 | 111 | No hit | No description |
PROSITE profile | PS50157 | 11.302 | 83 | 110 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MCNKGKDKVN EESVANLKMM VNQNNEKKRK AIMLEESDVE TQNSKTPLKD VAEEESTDSS 60 KKISPFLLFG FIVDHRKAIK NAYSCKFCSR KFTSPQALGG HQSSHKLERS LKKMIQGISL 120 NTITPFHMGC GYQCYGFNNM IQHGGSSNLY AGNLYGAFQH ISEIDEANEA DQSMMSQKVI 180 VSKIEVGKFS EGGAVSDEVD REDKETQEEE ASKIDLTLKL * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g028890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013447966.1 | 1e-163 | zinc finger protein 1 | ||||
TrEMBL | A0A072TYR6 | 1e-162 | A0A072TYR6_MEDTR; Putative transcription factor C2H2 family | ||||
STRING | AES77954 | 1e-116 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16279 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 8e-12 | zinc finger protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g028890.1 |
Entrez Gene | 25497791 |
Publications ? help Back to Top | |||
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