PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g453130.1 | ||||||||
Common Name | MTR_6g453130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 25275.8 Da PI: 9.0769 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 83.7 | 2.7e-26 | 4 | 109 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee..redamsslvyeAearardPvyGavgvilklqqql 87 +C++C+vlr++C++dC++ p++ p++q +++ +++k++G++ +l+ll+++ +++ +++++sl+yeA r+ +P yGa+g+++++++ Medtr6g453130.1 4 SCNGCRVLRKGCSDDCIIKPCLewiscPESQGNATLFLAKFYGRTGLLNLLTNATNQNqnPPAVFKSLLYEASGRLVNPTYGALGLLWTGNWSR 97 6**************************************************99955542369******************************** PP DUF260 88 eqlkaelallke 99 +++++e++l+++ Medtr6g453130.1 98 CEAAVEAVLTGS 109 ******998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.312 | 3 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.2E-21 | 4 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MKFSCNGCRV LRKGCSDDCI IKPCLEWISC PESQGNATLF LAKFYGRTGL LNLLTNATNQ 60 NQNPPAVFKS LLYEASGRLV NPTYGALGLL WTGNWSRCEA AVEAVLTGSN INDNFSTIDG 120 KTSSGTLNAE NHVLPKTYDI RHVAKDTNVD IKGKTQFKRV GQVLKPKPRV GSIDSATMLK 180 SLLKNTNMEI GETSSRVQTE KINEAAENQV NLELTLGFDS QSTKGKKILD K* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g453130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013452313.1 | 1e-171 | LOB domain-containing protein 41 | ||||
TrEMBL | A0A072UAA2 | 1e-170 | A0A072UAA2_MEDTR; LOB domain protein | ||||
STRING | AES84556 | 1e-156 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14785 | 6 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 7e-51 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g453130.1 |
Entrez Gene | 25497110 |
Publications ? help Back to Top | |||
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