PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g090505.1
Common NameMTR_6g090505
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 365aa    MW: 42164.6 Da    PI: 4.982
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g090505.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR127.97.8e-095921790
             FAR1 17 skskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                     ++++ +k+++++   ++vC+k+g+++ +  +             +  + ++++e+r+gCk  + + +++  +++++++ +  H H+l 
  Medtr6g090505.1  5 KNNSLNKKSDKVHYVRYVCNKQGFKKGSLLNpnnrptsdnlvviEFVKVKEKPEERVGCKDGICLMLDEvFNVYKIYRWDVAHCHPLH 92
                     55566688999***************998888999999999999888999****************99999***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-5592IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MLKSKNNSLN KKSDKVHYVR YVCNKQGFKK GSLLNPNNRP TSDNLVVIEF VKVKEKPEER  60
VGCKDGICLM LDEVFNVYKI YRWDVAHCHP LHKPEHLCYL RSFREVNEVQ GQLAVINSKA  120
GLLMRTSYEV MGQGVGGTEN LPFRFSDLKN YLMTIRQKEM VVGEATIIQE FFRNEALSKP  180
SFYYDIQVDA AEDITSIFLA NGIMQLDYSL FGDVISFDTT YRTNNQYRPL DDESDFDYNW  240
DQMMKNCFNG RPTSDGLSKL TEILSESFNA FLRGFLQPDH SLVRFFSHFN IMVQRMRDNH  300
AKLDFKVDDN YDDVDNDNDG PSDVDVLDAE LQENLFPSFE DHDRLDERVV TVDIRSKSFS  360
CAVI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g090505.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1450230.0AC145023.4 Medicago truncatula chromosome 6 clone mth2-30j24, complete sequence.
GenBankCU6331910.0CU633191.15 M.truncatula DNA sequence from clone MTE1-30H20 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632779.11e-169protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A072UBP10.0A0A072UBP1_MEDTR; FAR1 DNA-binding domain protein
STRINGAES614311e-136(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14214215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-20FAR1-related sequence 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]