PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g060410.1 | ||||||||
Common Name | MTR_6g060410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | FAR1 | ||||||||
Protein Properties | Length: 196aa MW: 22545 Da PI: 9.8897 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 44.6 | 4.8e-14 | 102 | 173 | 2 | 68 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkv 68 fY++YA ++GFsvr s+s+ + +ng ++ fvCskeg+ +++++ +k++r+ra tr gC+a+++ Medtr6g060410.1 102 FYEKYALSIGFSVRSSSSTIN-KNGVKRWKYFVCSKEGYLPNKTDDkeqsesIVKAKRRRALTREGCNANVVF 173 9**************999888.88889***********97666665567777788899***********9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.2E-12 | 102 | 173 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MLSLSAKTIT TSSLLPCLFF FASLSLSKLF SSHFLRHHKL GFQKITRLTF TSIELRSSFF 60 MDKDTSTSFQ IPQEYECVPN CDDELKPKIG QVFDTLQEGK FFYEKYALSI GFSVRSSSST 120 INKNGVKRWK YFVCSKEGYL PNKTDDKEQS ESIVKAKRRR ALTREGCNAN VVFYTGFART 180 HPLVFMWECF RKNIP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g060410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC174328 | 0.0 | AC174328.14 Medicago truncatula chromosome 6 clone mth2-115g4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024634877.1 | 2e-76 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A072U9Z0 | 1e-142 | A0A072U9Z0_MEDTR; FAR1 DNA-binding domain protein | ||||
STRING | AES89813 | 2e-65 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15907 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 5e-10 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g060410.1 |
Entrez Gene | 25496573 |
Publications ? help Back to Top | |||
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