PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g027710.1 | ||||||||
Common Name | MTR_6g027710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 228aa MW: 24421.4 Da PI: 9.4934 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.3 | 2.5e-38 | 40 | 141 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+++C++apyf +q ++kfa+vhk+FGasnv+k l+++p ++r++a++++ yeA+ar+ dPvyG+v+++l+lqqq++ ++ae Medtr6g027710.1 40 PCGACKFLRRKCSSGCIFAPYFGTDQgAAKFAAVHKVFGASNVSKHLSNIPASHRHEAAATISYEAQARLADPVYGCVSTLLALQQQVAAMQAE 133 7***********************9989****************************************************************** PP DUF260 94 lallkeel 101 +++++++l Medtr6g027710.1 134 VSMMQTQL 141 **999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.282 | 39 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.4E-38 | 40 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MAESQGGNGS SSGNRRNKSA NAAAKRAIAR ATQDEPVITP CGACKFLRRK CSSGCIFAPY 60 FGTDQGAAKF AAVHKVFGAS NVSKHLSNIP ASHRHEAAAT ISYEAQARLA DPVYGCVSTL 120 LALQQQVAAM QAEVSMMQTQ LMNRRLAYAN ASTLQAPYQP PFQLVQQPNF NVPVQPAYSN 180 NSSASTTNLM NMNNFNPGFG LTMETAPSSQ SLEPFQSSRM SRFEKDD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-35 | 40 | 143 | 11 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-35 | 40 | 143 | 11 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g027710.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013451538.1 | 1e-168 | LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 3e-62 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A072U858 | 1e-167 | A0A072U858_MEDTR; LOB domain protein | ||||
STRING | XP_004489657.1 | 1e-102 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 2e-46 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g027710.1 |
Entrez Gene | 25495833 |
Publications ? help Back to Top | |||
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