PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g018270.1 | ||||||||
Common Name | MTR_6g018270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 279aa MW: 30525.6 Da PI: 7.6382 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.3 | 3.1e-30 | 4 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l+++ +e+ r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q Medtr6g018270.1 4 SCNGCRVLRKGCSEDCSIRPCLewikcPQSQANATLFLAKFYGRAGLINLINSGSENLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWHLCQ 97 6********************************************************************************************* PP DUF260 90 lkaelallkee 100 +++e++l +e+ Medtr6g018270.1 98 AAVEAVLKGEP 108 ****9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 5.5E-111 | 1 | 278 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 16.794 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-24 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSEDCS IRPCLEWIKC PQSQANATLF LAKFYGRAGL INLINSGSEN 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWHLCQAAV EAVLKGEPIT PIDSEADENE 120 RGPPFKAYDI RHVSKDENLE ETKQVRTRSR FRRAMKPKPS KEVGSGSGSS SAKEVDRSKS 180 QESSLSQPGK DSESGVSVET SILFHDESEF EPESQAKVKG RAEGRAEEGL SDGVGLELRL 240 GIEPVSREEF MVPIKKRKIV LKDCSASSKV ELGLELSA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.20524 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g018270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC147741 | 0.0 | AC147741.12 Medicago truncatula clone mth2-17b23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003618732.1 | 0.0 | LOB domain-containing protein 40 | ||||
Swissprot | Q9M886 | 3e-88 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | G7KMR0 | 0.0 | G7KMR0_MEDTR; Seed specific protein Bn15D17A | ||||
STRING | AES74950 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 2e-90 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g018270.1 |
Entrez Gene | 11407695 |
Publications ? help Back to Top | |||
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