PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g071590.1 | ||||||||
Common Name | MTR_5g071590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | FAR1 | ||||||||
Protein Properties | Length: 189aa MW: 21546.4 Da PI: 7.8418 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 58.1 | 2.9e-18 | 62 | 169 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkek.dgkw 76 +fY +YA+++GFs+r+ ++k+ k++++i ++vC+k+g+++ + + + + ++++e+r+gCka + +k+++ +++ Medtr5g071590.1 62 DFYGNYAYNTGFSIRTMLKSKNnsqnKKSEKIHYLRYVCNKQGYKKGSLLNpnnrptsdsplviEFVKVKEKPEERVGCKAGIYLKLDEvLNVY 155 6*************98655555455699999***************998888999999999999888999*******************99*** PP FAR1 77 evtkleleHnHela 90 ++++ + H H+l Medtr5g071590.1 156 KIYRWDVAHCHPLH 169 ************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.4E-15 | 62 | 169 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MDLISTSSES GQLSVEASSL IHAESGQLSV ETSSMIHTEC YSPSNEESWK SLVFQSIKEV 60 EDFYGNYAYN TGFSIRTMLK SKNNSQNKKS EKIHYLRYVC NKQGYKKGSL LNPNNRPTSD 120 SPLVIEFVKV KEKPEERVGC KAGIYLKLDE VLNVYKIYRW DVAHCHPLHK PEHLCYLRPL 180 EPCTNNNF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g071590.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT963106 | 0.0 | CT963106.2 Medicago truncatula chromosome 5 clone mth2-64o22, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024626515.1 | 1e-119 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | G7JZL9 | 1e-137 | G7JZL9_MEDTR; FAR1 DNA-binding domain protein | ||||
STRING | AES98688 | 1e-138 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14214 | 2 | 15 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g071590.1 |
Entrez Gene | 11416564 |
Publications ? help Back to Top | |||
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