PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g055100.1 | ||||||||
Common Name | MTR_5g055100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 238aa MW: 27273.2 Da PI: 7.4504 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.4 | 3.2e-22 | 16 | 64 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ +n+sn qvtfskRr g++KKA+EL++LC+a +a+iifs++ k++ + Medtr5g055100.1 16 KKMSNESNLQVTFSKRRIGLFKKASELCTLCGAYIALIIFSPSEKVFSF 64 5689*****************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.432 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.2E-31 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.74E-35 | 9 | 77 | No hit | No description |
SuperFamily | SSF55455 | 5.36E-26 | 9 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-18 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.8E-23 | 18 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-18 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-18 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MSSGKKTQGR QKIEMKKMSN ESNLQVTFSK RRIGLFKKAS ELCTLCGAYI ALIIFSPSEK 60 VFSFGYPNVE TVIDRFLSQV PPQNDDIMQL LEDYRRANVR ELNDLLTRMN DAIGIDKNRE 120 NELIQVRMIN ETQFWWTRPI CEMNKVQLEL YKKALEDLLK LVAQHADRVE MQGTSTQNIP 180 FYVGNGSSSR MPLEHQPNPQ QDSTFSAGFF QNPMLQPHLF GFNNMGEECG HGPYGFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 8e-16 | 9 | 92 | 2 | 89 | MEF2 CHIMERA |
6byy_B | 8e-16 | 9 | 92 | 2 | 89 | MEF2 CHIMERA |
6byy_C | 8e-16 | 9 | 92 | 2 | 89 | MEF2 CHIMERA |
6byy_D | 8e-16 | 9 | 92 | 2 | 89 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g055100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU302348 | 0.0 | CU302348.1 Medicago truncatula chromosome 5 clone mth2-45a24, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003614528.1 | 1e-179 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 3e-52 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | G7JZE1 | 1e-178 | G7JZE1_MEDTR; MADS-box transcription factor family protein | ||||
STRING | AES97486 | 1e-179 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-54 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g055100.1 |
Entrez Gene | 11442135 |